mRNA_S-firma_F_contig10234.360.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: D8LF41_ECTSI (Signal recognition particle subunit SRP68 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF41_ECTSI) HSP 1 Score: 727 bits (1877), Expect = 2.830e-258 Identity = 398/484 (82.23%), Postives = 416/484 (85.95%), Query Frame = 3
Query: 45 MAATDDGANMSVAEAAAVDVPAPPAAKLSLTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQETADAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
MA T+DG+ V PAP AKLSL KVHEIAKDAQN+NGLRHGDYHQYRQYCTRRLKRVRS QVRFMFGKGK FVQKELTP+ VTSASHLEIPLM AERAWA+ MQRKQETADAPYRVRRHV TRLAKAAKW+ DLEALCLETADERTCLEATAY AWMSGNLLLEKEAWREAL+R+STA RICQELGKVG IEDQDLFSRRVEEIEP+LRYCRYNLD A A E LLEM REDS+AGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRL AG GS EDPKPGQYLKVFGAYDDAL T+S E SRLQGKGGG KMEAHR+ELE LRAYAQHHKLRLMLQRNERLV+ELQ KRKAGG G G+RDPVGEVADIVHVYDALLQSVRSMVTNL GG+D +DDIAE EDE++ES RADEARFRAFRCFFVIEAFSAQQK
Sbjct: 1 MAETEDGSAECVVGMEVAKEPAPSLAKLSL--KVHEIAKDAQNRNGLRHGDYHQYRQYCTRRLKRVRSLPQVRFMFGKGKGFVQKELTPESVTSASHLEIPLMMAERAWAFAMQRKQETADAPYRVRRHVVTRLAKAAKWSGDLEALCLETADERTCLEATAYCAWMSGNLLLEKEAWREALDRFSTADRICQELGKVGAIEDQDLFSRRVEEIEPILRYCRYNLD---------ATASEELLEMSREDSSAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLEAGG------GSPGCEDPKPGQYLKVFGAYDDALGTISQETSRLQGKGGGAKMEAHRSELEGLRAYAQHHKLRLMLQRNERLVQELQEKRKAGG------GGGERDPVGEVADIVHVYDALLQSVRSMVTNLGGGDDENDDIAELEDEVIESARADEARFRAFRCFFVIEAFSAQQK 461
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A836CNG0_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG0_9STRA) HSP 1 Score: 369 bits (946), Expect = 3.770e-116 Identity = 222/469 (47.33%), Postives = 292/469 (62.26%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQE---TADAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSM---------VTNLVGGE--DTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
L+L++HE K+ Q+ NGLRHGDY QYR YC+RRL+RVR+++QV+F FGKGK F +K LT DM +A+ LEIPLM AER+WA+ MQ KQ+ ++ R H+ RL+KAAKWA+DLE LC DERT LEA AY+A+M GN+LLEKE+W ALE+ +T HR+C+ELG+VG + DQDLFS R EEIEP +RYC+YNL A G A A E ++ LLAAKL SVV+EAR +QA AL V+W+ +++ VR + L VAL+ A E +R L A GGG G + ++V +DD + E + LQGKGGG ++E R EL L AYA+H KLRLM++RNE LVE L+ G +P ADIVH+Y AL+Q+VR M T+L E D E + + V ADEA +RA RCF++ EA++ Q K
Sbjct: 130 LSLRIHETIKEKQSANGLRHGDYLQYRHYCSRRLRRVRTNKQVKFTFGKGKQFTKKTLTLDMAKNAAFLEIPLMFAERSWAFAMQLKQDLGSSSSTSSAERHHLMRRLSKAAKWASDLETLCAAAGDERTALEACAYAAFMCGNVLLEKESWGGALEKLTTVHRVCRELGQVGDLADQDLFSARAEEIEPSVRYCKYNLSKAGG----ATTATESFSLDQQNXXXXXXXLLAAKLASVVSEARLQQAKALAHVDWQARRIPVRGQGLSVALIAAREASRGLEAALRTGGGVGGRNDA-----LSVRVLNGWDDVAGEAAKETAALQGKGGGARVEGQRMELALLSAYAKHSKLRLMVKRNEALVEGLKQ-----------ASTGGSEPRN--ADIVHLYKALMQNVREMKDCLSVAAAATDLASSESADMXXXXXXEHEAALAEVEADEAWYRACRCFYLSEAYAEQGK 576
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A7S2BZZ1_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZZ1_9STRA) HSP 1 Score: 295 bits (754), Expect = 1.030e-89 Identity = 191/464 (41.16%), Postives = 263/464 (56.68%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTP-DMVTSASHLEIPLMTAERAWAYGMQRKQETA--DAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRK------AGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
+ L+VHE Q NGLRHGDY Q TRRL+RVR F +G+G+ FVQ+ELT D+ SA L +PL+ +ERAWAY MQ KQE + V H+ RL KA +W+A E LC AD+ T LEA AY++WM+ NL LE+ W ALE+Y+TAHRIC+++G VG +E QDLF++R EEI +R+C YNL TG + A L + +GGDLL A+L++V+ +ARK+QA L+ + WR +AVR ETLR+A+V A EL L S++ +D QY KV A +DAL V++ S L GG K+EA R +L L Y H KL M +R++RLV EL+ K + + P DIVH+Y +L Q ++ M+ L G EE+D+L ++++A A RA RC+F+ E +S K
Sbjct: 14 IALRVHETISSLQGLNGLRHGDYEQXXXXATRRLRRVRKG--ANFTYGRGRQFVQRELTAEDVEASAPLLMVPLLNSERAWAYAMQLKQEITRGEGNAAVSNHLLRRLTKAVQWSAAFEELCKVRADDATRLEANAYASWMAANLDLERGEWAGALEKYTTAHRICEDMGTVGSVELQDLFTQRAEEIRQSIRFCNYNL---TGGSSSSTDAPPTL-------TGSGGDLLQAQLDAVLVDARKRQAQTLEELTWRSHTIAVRDETLRLAIVSARELDGDLE----------STTADDRSDNQYSKVLNACEDALKIVNSNISSLATMTGGTKLEAQREDLRLLSGYLSHIKLTRMFERSKRLVLELRESWKIHTLTFSANKSSAAAAKSPARP----EDIVHLYGSLTQILQDMLA-LPG--------VEEDDDLADALQAKLASVRAHRCYFLAETYSTNAK 442
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A7S2B7L4_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7L4_9STRA) HSP 1 Score: 285 bits (728), Expect = 8.180e-86 Identity = 186/460 (40.43%), Postives = 263/460 (57.17%), Query Frame = 3
Query: 120 AKLSLTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQ--ETADAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDS---VEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFS 1484
A++ LK+HE+ Q NG+RH DY YR++ TRRL++VR S + F +G+G++FV+KE+T + A HL I L+ ERAWAY MQ KQ ++ + H+ R KA KW+ LE L AD RTCLE AY++WMS NL +E+EAW +ALE ++TAHRIC+ELGKVG +E QDLF++R EEI +RYC YN+ + G+G A A + ++ E L A+L++V A ASA+D+ +EWR K+ + E LR +VKA E+ R L +++ E+ K QY KV AYDDAL T+S + +L GG K EA R +L L + KL ML+RN++L L+A +A G + P DIVH+YDA+ Q + M+ L G ED +D+L++ +A RA RCFF+ E +S
Sbjct: 12 AEVKAELKIHEVVAKLQQLNGMRHSDYEAYRRFLTRRLRKVRKS--INFTYGRGRNFVKKEITAENAQPA-HLMILLLNTERAWAYAMQLKQTMNRGESENHLANHMLRRFTKAVKWSTALEQLSGNLADGRTCLEINAYASWMSANLYVEQEAWSKALENFTTAHRICEELGKVGSLEQQDLFTQRSEEITQSIRYCNYNMGSDKGEGGVAEAMADGGMQSSAE--------LEAQLDAVTAST----ASAVDNKDMMEWRHHKIPIHDEDLRKQVVKAKEVDRNLD----------TTALEERKESQYFKVINAYDDALHTLSTKLDKLSEVSGGAKAEAMRRDLSLLTGALSYLKLSRMLERNKQLATGLRATWRA--ETLARAGGANARP----EDIVHLYDAVGQIYQDMI-KLTGVED--------DDDLMDEFQAKMMLNRACRCFFLAETYS 431
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A2R5GG74_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG74_9STRA) HSP 1 Score: 251 bits (641), Expect = 1.330e-72 Identity = 187/496 (37.70%), Postives = 254/496 (51.21%), Query Frame = 3
Query: 45 MAATDDGANMSVAEAAAVDVPAPPAAKLSLTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRF-MFGKG--KSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQET---ADAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQ--GKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRN----ERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
M A DG AEAAA A P KLSL + E K +Q QNGLRH DY +YRQYCTRRL+R+R +++V F + GK ++F +ELT + T L++ L+ AERAW Y MQ K E + P R R H+ RLAKA +W+A L LC E AD+RT LEA AY+AWM GNLLLEKE W++A + A + ++L + E ++L R+E+IEP LRYC+YNL G G A ++ +E E G DLL AK++ V+ E RK QA +V WRG +V VRS LRV L++ + L A GGD D +L+ DD L E S+ E E + +RAY + KL + + RN +++ E+ G + V + D+VH+YD LQSV ++ L G D AEE+ +R E AFR + + AQ K
Sbjct: 1 MGAEKDGPTEPAAEAAAA---AGPQEKLSLNIL--EAVKTSQQQNGLRHRDYQRYRQYCTRRLRRLRKNKRVDFKLAGKNPREAFQGRELTAEDCTDERFLQLALVNAERAWGYAMQLKDENQRDGEEP-RKRLHLVRRLAKATRWSAKLRELCHEVADDRTTLEAEAYAAWMQGNLLLEKEWWKDAYLEFEKARNVYEQLSSIVEPELRELMQERIEDIEPALRYCKYNLSREEGPGKSQDALKQLQIEAE------GSDLLQAKIKKVIEENRKIQAEQASTVSWRGHQVPVRSPALRVKLLEIRDQLSALEEAKNAAGGDXXXX--DDLEAAFLETLSVCDDTLRLAREEKSKPSKASSSSTANPEKIAEEYDYIRAYIKTQKLLISIDRNMLYASKMLREMD---------------GQKTTV-KPQDLVHIYDQSLQSVHDILDLL--GPDAEQHSAEEDVVSAPEMRVQEGICTAFRTLLIGRTYQAQAK 464
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A6A7G753_9CRUS (Signal recognition particle subunit SRP68 n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G753_9CRUS) HSP 1 Score: 246 bits (628), Expect = 4.130e-71 Identity = 166/463 (35.85%), Postives = 263/463 (56.80%), Query Frame = 3
Query: 123 KLSLTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQETADAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEAS-----RLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
+ +TL + + K +Q QNGLRH DY +YRQYCTRRL+RVR + ++F G+ K+FV++ + + +L IPLM AERAWAY MQ+K E D R R H+ RL KAA W++ L LC AD RT LEA AY +WM+GN+LLE+E W +ALE++ A + +L K+G +E L R E + P ++YC Y L ++ G GDG+ +E LL+ D ++L +K+E+V+++ R +QA + D+++W+G+ V + +E +R+++++++EL +L DG + E +++VF +YD+AL V + R++G G + A L LR Y HKLR + RN L E L A + G + + +D+V +Y+ LL +V ++ VG +++ + +E VR A F +FRCF+V E+++A K
Sbjct: 8 EFKVTLPILAVIKTSQQQNGLRHNDYRRYRQYCTRRLRRVRKT--LKFTHGR-KNFVKRTVELKDIKDERYLLIPLMQAERAWAYAMQQKHEMTDDRDRSRFHLIRRLTKAAFWSSQLTKLCSVAADARTALEAEAYCSWMNGNILLEREIWSDALEKFVHAKTVFDQLSKLGNLEQNALCHERSENLGPSIKYCSYVLGSSAG-GDGSLNSE--LLK----DRGTLDEILLSKVENVMSDIRTQQAKSFDTIQWKGEYVPIHNEKVRLSILRSNELTSQL---------DGQENAEKQMD-LFIEVFSSYDEALVFVRNDLQNEANKRVRGSEPGPREVA----LGLLRDYLTFHKLRNTIHRNLLLTESLTASLDSENNSDQPPSIGKKSV--KPSDLVVMYEKLLNNVENL--GEVGEMKSNESLHQE-------VRLKTAVFTSFRCFYVAESYAAALK 435
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A024TMN8_9STRA (Signal recognition particle subunit SRP68 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMN8_9STRA) HSP 1 Score: 246 bits (627), Expect = 5.650e-71 Identity = 164/463 (35.42%), Postives = 252/463 (54.43%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQETA--------DAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
L+L + E K +Q QNGLR GDY +YRQ+C RRL+R+R ++F+ GKGK FV KE+TPD+ + HL +PL +ERAW+Y MQ +++ +A R++ H+ RL KA W+ L ALC E AD RT LEA AY+++MSGNL L KE W+ ALE++STA RI EL KVG + QDL + ++EI P +RYC YNL G ++ + + L RE +T+ LL +K++ V E K +A + ++ WRG+ + + + + VALV+ +E +L G + + + Y+ +FG YD L ++AE + G +AHR + AL Y ++ K ++ RN L +L+++ GG G GD ++H+ D L+++V M + G D ++ +A + F AFRC +V + + Q K
Sbjct: 22 LSLPILETIKFSQQQNGLRFGDYTRYRQHCARRLRRLRKG--LKFVHGKGKQFVPKEVTPDIASEVRHLMLPLYHSERAWSYAMQLREDERNDKDEHGDEASSRIKFHLLGRLKKAVAWSDKLTALCAERADVRTNLEAEAYASYMSGNLALYKEEWKVALEKFSTAQRIYSELAKVGTVVQQDLLHQILDEISPFMRYCEYNL------GGSSSLSLQEL----RESTTSA--LLQSKIDQVFHEEAKTKAKDMAAITWRGRAIPIPNSDVSVALVRPEEHLAKLKKG---------TDNDKKRDAIYVDLFGCYDMILRLLAAEKIKTDTMKSGFMADAHRENVTALDEYVRYIKQTHVIDRNVVLFTQLKSRLGGGGV-----GPGD---------LIHILDMLIRNVDDMAA-IPGTTDHGP---------FKAYQALQCTFHAFRCNYVAQVYVGQNK 437
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A1V9YWD3_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWD3_9STRA) HSP 1 Score: 240 bits (612), Expect = 8.330e-69 Identity = 165/463 (35.64%), Postives = 244/463 (52.70%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQR-------KQETAD-APYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
L+L + E K +Q QNGLR GDY++YRQ+C RRL+R+R ++FM GKGK FVQKE+T D HL +PL +ERAW+Y MQ K+E D A R++ H+ RL KA W+ L LC + D RT LEA AY+++M+GNL L KE W+ ALE+++TA RI EL KVG QDL + +EEI P +RYC YNL+ +G L+ RE +T+ LL +K++ ++ E K +A + + W+G+++ + S+ L VA+V+ DE +L + E + Y+++FG YD L ++ E S+ G EA R + AL Y + KL +RN L +L+A+ DR P D++H+ + LLQ++ M V G AEE ++ + F A R +V + + A K
Sbjct: 24 LSLPILETIKFSQQQNGLRFGDYNRYRQHCARRLRRLRKG--LKFMHGKGKGFVQKEVTADNAYEVRHLMLPLYHSERAWSYAMQLREDERNDKEENGDEASSRIKFHLLGRLKKAVVWSDKLATLCTQRGDARTSLEAEAYASYMAGNLALYKEEWKAALEKFTTAQRIYTELAKVGTSVQQDLVHQILEEISPFMRYCEYNLNMLSGTS----------LQDLRESTTSA--LLQSKIDQIMHEEAKTKAKTMAKITWKGREITIPSDDLSVAMVRPDEHLAKL---------NKPDITEKKRDITYVELFGCYDAILRMLANERSKTDSMKSGFMAEAQRENITALEEYVRFLKLTHTAERNFNLFTQLKARLST-----------DRAP----GDMIHILEMLLQNIDDM--RAVPG-------AEEHPSMINKYSILQPLFHAMRANYVAQMYLAGNK 439
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: A0A6G0WAZ1_9STRA (Signal recognition particle subunit SRP68 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAZ1_9STRA) HSP 1 Score: 237 bits (605), Expect = 9.910e-68 Identity = 150/416 (36.06%), Postives = 233/416 (56.01%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQETA--------DAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVT 1355
L+L + E K +Q QNGLR GDY +YRQ+C RRL+R+R ++F+ GKGK FV KE+T D T HL +PL +ERAW+Y MQ +++ DA R++ H+ RL KA W+ L ALC + AD RT LEA AY+++M+GNL L KE W+ ALE++ TAHRI EL KVG +DL + ++EI P +RYC YNL +G ++++ E L+ RE + + LL +K++ V E K +A + ++ WR + V + S L VA+V+ DE +L + E + Y+++F +YD L +++E S+ + G EA R ++ L Y + K +++RN L+++L+A+ G GD ++H+ + L+++V M T
Sbjct: 22 LSLPILETIKFSQQQNGLRFGDYTRYRQHCARRLRRLRKG--LKFLHGKGKQFVPKEVTADNATEVRHLMVPLYHSERAWSYAMQLREDERNDKEENGDDASSRIKFHLLGRLKKAVSWSDQLSALCSKRADARTSLEAEAYASYMAGNLALYKEEWKLALEKFGTAHRIYSELAKVGTTVQKDLLHQILDEISPFMRYCDYNLGVLSG----SSSSNEATLQELRESTNSA--LLQSKIDQVFLEEAKSKAKDMAAITWRQRSVPIPSTDLSVAMVRPDEHLAKL---------KKITDNEKKRDAVYMELFASYDAILRLLASEKSKSETMKSGFMAEAQRENVQFLDEYIRFVKQTHVVERNLTLMQQLKAR------LGVDVGPGD---------MIHILETLVRNVDDMQT 405
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Match: W4G3I1_9STRA (Signal recognition particle subunit SRP68 n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3I1_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.270e-67 Identity = 159/463 (34.34%), Postives = 249/463 (53.78%), Query Frame = 3
Query: 132 LTLKVHEIAKDAQNQNGLRHGDYHQYRQYCTRRLKRVRSSRQVRFMFGKGKSFVQKELTPDMVTSASHLEIPLMTAERAWAYGMQRKQETA--------DAPYRVRRHVATRLAKAAKWAADLEALCLETADERTCLEATAYSAWMSGNLLLEKEAWREALERYSTAHRICQELGKVGRIEDQDLFSRRVEEIEPLLRYCRYNLDTATGDGDGAAAAEEHLLEMEREDSTAGGDLLAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLGAGAAAGGGDGSSSGEDPKPGQYLKVFGAYDDALATVSAEASRLQGKGGGVKMEAHRAELEALRAYAQHHKLRLMLQRNERLVEELQAKRKAGGXXXXXXGRGDRDPVGEVADIVHVYDALLQSVRSMVTNLVGGEDTSDDIAEEEDELVESVRADEARFRAFRCFFVIEAFSAQQK 1496
L+L + E K +Q QNGLR GDY +YRQ+C RRL+R+R ++F+ G+GK F+ K++TP+ + HL +PL +ERAW+Y MQ +++ +A R++ H+ RL KA W+ L ALC+E AD RT LEA AY+++M GNL L +E W+ ALE++STA RI EL KVG + +DL + ++EI P +RYC YNL G ++ L E+ RE +T+ LL AK++ V E K +A L ++ WRG+ + + S + VAL++ DE +L G + + + Y+ +FG YD L ++AE ++ G EA R + L Y ++ K +++RN L+ +L+A+ + D P D+VH+ D L+++V M + G D + + RA + F A RC +V + + K
Sbjct: 22 LSLPILETIKFSQQQNGLRFGDYTRYRQHCARRLRRLRKG--LKFLHGRGKQFIPKDVTPENASEVRHLMLPLYHSERAWSYAMQLREDERNDKEEHGDEASSRIKFHLLGRLKKAVAWSDKLTALCVERADVRTNLEAEAYASYMGGNLALYQEEWKVALEKFSTAQRIYSELAKVGTVVQRDLLHQILDEISPFMRYCEYNL--------GGTSSSLSLQEL-RESTTSA--LLQAKIDQVFHEEAKTKAKDLAAITWRGRAIPIPSADVSVALIRPDEHLAKLKKG---------TDNDKKRDAIYVDLFGCYDTILRLLAAEKTKSDTMKSGFMAEAQRENIAFLDEYIRYVKQTHVIERNVALLTQLKARLEV-----------DLGP----GDLVHILDMLIRNVDDMAA-IPGAADHAPFL---------KYRALQLIFHALRCTYVAQVYLGLNK 437 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10234.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10234.360.1 >prot_S-firma_F_contig10234.360.1 ID=prot_S-firma_F_contig10234.360.1|Name=mRNA_S-firma_F_contig10234.360.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=484bp MAATDDGANMSVAEAAAVDVPAPPAAKLSLTLKVHEIAKDAQNQNGLRHGback to top mRNA from alignment at S-firma_F_contig10234:1590..4891+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10234.360.1 ID=mRNA_S-firma_F_contig10234.360.1|Name=mRNA_S-firma_F_contig10234.360.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3302bp|location=Sequence derived from alignment at S-firma_F_contig10234:1590..4891+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10234:1590..4891+ >mRNA_S-firma_F_contig10234.360.1 ID=mRNA_S-firma_F_contig10234.360.1|Name=mRNA_S-firma_F_contig10234.360.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2904bp|location=Sequence derived from alignment at S-firma_F_contig10234:1590..4891+ (Sphaerotrichia firma ET2_F female)back to top |