mRNA_S-firma_F_contig10149.254.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 3.030e-155 Identity = 273/387 (70.54%), Postives = 300/387 (77.52%), Query Frame = 1
Query: 1 MVTVGAKAEHESRVRAEEETRVTRKQLEEERERTRLMMKKMARLAVEKKEQEKKHQELAKELGLQRRRETPAPPVANLNVRLRHQVIAEARRAVQRQRELDTMAKLVKANANLRRQVCESGERL-----------------------GHFVFSE---RLRPIDASTGSIPEGEEHKEXXXXXXXXXXXXXXXKAGATQSKRRSYGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGGCVTKLQQKLRGEDSTAV--QQQGG 1077
+ T A+AEHESRVRAEEE R KQL MARLA EKKEQEKK+ E+A+ELGL+R +TPAPPV + NVRLRHQVI EARRA+QR+RELDTMAKLVK N+ LRRQ E + G + E RLRPIDA+T SIPEGEE XXXXXXXXXXXXXX G TQSK R YG+ ARLCQ+YLE G P C+VG L+MSTLRLAT VELDV GGKMKFHGTTVKRLALG+AHLDMAELIAMIL+APY+LIAGDESLRKGDKKFPIFVACWDV+AGRPWWGLLRMCSMKDKTAETQAS+FFETIV+VLKYPRHQVLYVLSDNTA +SG KGGCVTKLQQKLRGED+TAV Q+QGG
Sbjct: 104 VTTSAAQAEHESRVRAEEEKRAVTKQLXXXXXXXXXXXXXMARLASEKKEQEKKYHEMARELGLERLWKTPAPPVPDTNVRLRHQVIDEARRAMQRKRELDTMAKLVKLNSQLRRQGSRQRETIETLRKNLKDGSDALVAARKPSPAGKGMLEEIQDRLRPIDATTESIPEGEEETXXXXXXXXXXXXXXXG-TGVTQSKARLYGLNLARLCQEYLEAGTPRCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVAGRPWWGLLRMCSMKDKTAETQASIFFETIVNVLKYPRHQVLYVLSDNTACISGEKGGCVTKLQQKLRGEDTTAVPRQEQGG 489
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE) HSP 1 Score: 409 bits (1052), Expect = 2.510e-138 Identity = 239/337 (70.92%), Postives = 266/337 (78.93%), Query Frame = 1
Query: 112 MKKMARLAVEKKEQEKKHQELAKELGLQRRRETPAPPVANLNVRLRHQVIAEARRAVQRQRELDTMAKLVKANANLRRQVCESGERL-----------------------GHFVFSE---RLRPIDASTGSIPEGEEHKEXXXXXXXXXXXXXXXKAGATQSKRRSYGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGGCVTKLQQKLRG 1044
MK+MARLA KKEQEKK+ E+A+ELGL+R R+TPAPPV + NVRLRHQVI EARRA+QR+ ELDTMAKLV+ N+ LRRQ E + G+ +F E RLRPIDA+T SIPEGEE EXXXXXXXXXXXXXX G TQSKRRSYG+ A LCQ+YLE G PLC+VG L+MSTLRLAT VELDV GGKMKFHGTTVKRLALG+AHL+MAELIAMIL+APY+LIAGDESLRKGDKKFPIFVACWDV+A RPWWGLLRMCSMKDKTAETQASLFFETIV+VLKYPR QVLYVL DNTASVSG KGG + + G
Sbjct: 1 MKEMARLASAKKEQEKKYHEMARELGLERLRKTPAPPVPDTNVRLRHQVIDEARRAMQRKIELDTMAKLVELNSQLRRQGSRQRETIETLRKNLKDGSDALVAARKPSPAGNGMFEEIQDRLRPIDATTKSIPEGEEETEXXXXXXXXXXXXXXG-TGVTQSKRRSYGLNLAGLCQEYLEAGTPLCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVACWDVVASRPWWGLLRMCSMKDKTAETQASLFFETIVNVLKYPRRQVLYVLPDNTASVSGEKGGVCNQAAAEAAG 336
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5KFY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY6_9PHAE) HSP 1 Score: 220 bits (560), Expect = 4.670e-64 Identity = 144/276 (52.17%), Postives = 168/276 (60.87%), Query Frame = 1
Query: 118 KMARLAVEKKEQEKKHQELAKELGLQRRRETPAP------PVANLNVRLRHQVIAEARRAVQRQRELDTMAKLVKANANLRRQVCESGERL-------------------------GHF-VFSERLRPIDASTGSIPEGEEHKEXXXXXXXXXXXXXXXKAGATQSKRRSYGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRP 849
KMARL EK+EQ+KK++ELA ELGL+RR P P P ++ LRHQVI EARRA QR+R+L TM KLV ANANLRRQ E + G F V RLRPIDA++GSI EG E K+ + A QSKRRSYG+ AARL ++YLE G+PL RVG LIM TLRLATD+ELDV+GGKMKFHGTTVKRLALG+AHLDMAELIAMIL+AP KG + FP + W V P
Sbjct: 117 KMARLTSEKREQDKKYRELAAELGLKRRERAPPPAPAAAAPAVGSSLVLRHQVINEARRAAQRERDLQTMRKLVTANANLRRQGSRQRETIVKQASALKEHVAALKAAREPSPAPKGIFEVVQGRLRPIDAASGSIEEGGEEKDA---------------SRAKQSKRRSYGLHAARLAKEYLESGVPLSRVGRLIMCTLRLATDMELDVEGGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPSS--RATSRCGKGTRSFP---SLWRVGMSLP 372
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE) HSP 1 Score: 186 bits (473), Expect = 3.620e-50 Identity = 100/175 (57.14%), Postives = 125/175 (71.43%), Query Frame = 1
Query: 532 YGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGGCVTKLQQKLRGEDST 1056
+G AARL + ++E G+ L L+ ST+ AT V+L + + TVK LA G+ LD EL+ +L+AP++LIAGDESLR GDKKFP+FVA DV A PW+GLLR+CSMKDKTAETQA LF+ETIV L YP+HQVL+VLSDNTASVS G V LQ+KLRGE++T
Sbjct: 150 FGETAARLFKSFVEGGVSLNMTPQLLQSTVFHATGVKLK-QDLNITCARNTVKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQVLFVLSDNTASVSSEGKGRVKLLQRKLRGEETT 323
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE) HSP 1 Score: 184 bits (466), Expect = 3.030e-49 Identity = 101/177 (57.06%), Postives = 125/177 (70.62%), Query Frame = 1
Query: 532 YGMRAARLCQQYLEVGIPLCRVGSLIM--STLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGGCVTKLQQKLRGEDST 1056
+G AARL + ++E G+ L L+ ST+ AT V+L + + TVK LALG+ LD EL+ +L+AP++LIA DESLR DKKFP+FVA DV A PW+GLLR+CSMKDKTAETQA LF+ETIV L YP+HQVL+VLSDNTASVS GCV LQ+KLRGED+T
Sbjct: 201 FGETAARLFKSFVEGGVSLNMTPQLLQPTSTVFHATGVQLK-QDLNITCARNTVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQVLFVLSDNTASVSSEGKGCVKLLQRKLRGEDTT 376
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI) HSP 1 Score: 157 bits (396), Expect = 6.880e-40 Identity = 118/320 (36.88%), Postives = 166/320 (51.88%), Query Frame = 1
Query: 67 TRKQLEEERERTRLMMKKMARLAVEKKEQEKKHQELAKELGLQRRRETPAPPVANLNVRLRHQVIAEARRAVQRQRELDTMAKLVKANANLRRQVCESGERLGHFVFSERLRPIDASTGSIPEGEEHKEXXXXXXXXXXXXXXXKAGATQSKRR-----SYGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGG 1011
+R+Q EE R R M K++A L K K + L ++ G+ + P PP + L +++ E +A + QR++D + +V A L+RQV ++ + D G + E +E K K R +G AARL Q +++ G+ L L+ ST+ T V L + + TVK LALG+ LD EL+ IL+AP++LIAGDESLR GDKKFPIFVA +DV A PW+GL+R+CSMKDKTAETQA LF+ETIV L YP+HQ + +G +GG
Sbjct: 40 SRRQAEE---RVRDMSKELAGLKDSVKSLRKTNATLLEDAGIPIVADDP-PPEEDSTRSLEDELLLEKVKAERLQRKVDYLTPIV---AGLKRQVSNEKKKTKRAKLNLGNLKADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLK-QDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ----RERTKGNANGVQGG 347
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI) HSP 1 Score: 157 bits (396), Expect = 4.320e-39 Identity = 118/320 (36.88%), Postives = 166/320 (51.88%), Query Frame = 1
Query: 67 TRKQLEEERERTRLMMKKMARLAVEKKEQEKKHQELAKELGLQRRRETPAPPVANLNVRLRHQVIAEARRAVQRQRELDTMAKLVKANANLRRQVCESGERLGHFVFSERLRPIDASTGSIPEGEEHKEXXXXXXXXXXXXXXXKAGATQSKRR-----SYGMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQVLYVLSDNTASVSGAKGG 1011
+R+Q EE R R M K++A L K K + L ++ G+ + P PP + L +++ E +A + QR++D + +V A L+RQV ++ + D G + E +E K K R +G AARL Q +++ G+ L L+ ST+ T V L + + TVK LALG+ LD EL+ IL+AP++LIAGDESLR GDKKFPIFVA +DV A PW+GL+R+CSMKDKTAETQA LF+ETIV L YP+HQ + +G +GG
Sbjct: 143 SRRQAEE---RVRDMSKELAGLKDSVKSLRKTNATLLEDAGIPIVADDP-PPEEDSTRSLEDELLLEKVKAERLQRKVDYLTPIV---AGLKRQVSNEKKKTKRAKLNLGNLKADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLK-QDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVAFYDVEADAPWFGLVRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ----RERTKGNANGVQGG 450
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.040e-34 Identity = 76/141 (53.90%), Postives = 97/141 (68.79%), Query Frame = 1
Query: 535 GMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGRPWWGLLRMCSMKDKTAETQASLFFETIVSVLKYPRHQ 957
G AARL + ++E G+ L L+ ST+ AT V+L + + TVK LALG+ LD EL+ +++AP++LI GDESLR DKKFP+FVA DV A PW+GLLR+CSMKDKTAETQA LF+ETIV L YP+HQ
Sbjct: 83 GETAARLSKSFVEGGVSLNTTPQLLQSTVFHATGVKLK-QYLNITCPRNTVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVAFHDVEADAPWFGLLRVCSMKDKTAETQAQLFYETIVDTLGYPKHQ 222
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5L160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L160_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.700e-12 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 535 GMRAARLCQQYLEVGIPLCRVGSLIMSTLRLATDVELDVKGGKMKFHGTTVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFPIFVACWDVIAGR 846
G AA+L Q +++ G+ L L+ STL T V L + + TVK L LG+ LD EL+ IL+AP++LIAGDESL GDKKFPIFVA GR
Sbjct: 226 GETAAKLFQSFVQGGVSLNMTQQLLQSTLFHTTGVRLK-QDLNITCARNTVKVLGLGITQLDEKELVKAILKAPFLLIAGDESLLNGDKKFPIFVAFLRRRGGR 328
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 3.240e-6 Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 682 TVKRLALGVAHLDMAELIAMILQAPYILIAGDESLRKGDKKFP 810
TVK L LG+ LD EL+ ILQAP++LIA DESLR GDKKFP
Sbjct: 303 TVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFP 345 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10149.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10149.254.1 >prot_S-firma_F_contig10149.254.1 ID=prot_S-firma_F_contig10149.254.1|Name=mRNA_S-firma_F_contig10149.254.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=437bp MVTVGAKAEHESRVRAEEETRVTRKQLEEERERTRLMMKKMARLAVEKKEback to top mRNA from alignment at S-firma_F_contig10149:3010..4536- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10149.254.1 ID=mRNA_S-firma_F_contig10149.254.1|Name=mRNA_S-firma_F_contig10149.254.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1527bp|location=Sequence derived from alignment at S-firma_F_contig10149:3010..4536- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10149:3010..4536- >mRNA_S-firma_F_contig10149.254.1 ID=mRNA_S-firma_F_contig10149.254.1|Name=mRNA_S-firma_F_contig10149.254.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2622bp|location=Sequence derived from alignment at S-firma_F_contig10149:3010..4536- (Sphaerotrichia firma ET2_F female)back to top |