mRNA_S-firma_F_contig1010.188.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1010.188.1
Unique NamemRNA_S-firma_F_contig1010.188.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1010.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1010contigS-firma_F_contig1010:6441..7312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size874
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.1527596-UTR-S-firma_F_contig1010:6440..68531622815537.1527596-UTR-S-firma_F_contig1010:6440..6853Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 6441..6853 +
1696949398.8915486-UTR-S-firma_F_contig1010:6440..68531696949398.8915486-UTR-S-firma_F_contig1010:6440..6853Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 6441..6853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.1657772-CDS-S-firma_F_contig1010:6853..73121622815537.1657772-CDS-S-firma_F_contig1010:6853..7312Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 6854..7312 +
1696949398.9004028-CDS-S-firma_F_contig1010:6853..73121696949398.9004028-CDS-S-firma_F_contig1010:6853..7312Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 6854..7312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1010.188.1prot_S-firma_F_contig1010.188.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1010 6854..7312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1010.188.1

>prot_S-firma_F_contig1010.188.1 ID=prot_S-firma_F_contig1010.188.1|Name=mRNA_S-firma_F_contig1010.188.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=153bp
MVNRQERKIRSTCEREHHRRAHERKIIGAAATIFFRTKTSFVITFINRLF
YPHHNATNVTIRRHSNSKRRGTIASILSSLLMVCILLLSSHFTFLHVSSS
LLTMLQLRAAPKSRKGFKHAFFTWPVHRELFYCKQKGALNSYNTCYTRPH
SPS
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mRNA from alignment at S-firma_F_contig1010:6441..7312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1010.188.1 ID=mRNA_S-firma_F_contig1010.188.1|Name=mRNA_S-firma_F_contig1010.188.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=872bp|location=Sequence derived from alignment at S-firma_F_contig1010:6441..7312+ (Sphaerotrichia firma ET2_F female)
CCTGTTGCATCCGCAACCTTCGTCTGCTTGCGACGGCAACTCTACGGCCC
AAATGTTCTTCTAGGTAAGCTCAACGAGGGCGATCAGCGATCAGTCGTCG
ATATTTTGTCTTGAGCATCGAGGGACACAATATATGGTGCCCACCCTTCG
TAGACAGAACAAGGGGTCAAACCCCACCGGCAGCAGCTGTAATGGTCACG
CTAAACAGCATTGGTACCACTTTGCCTCCTCCCAAGAGCTCGCGCCGCAA
GCTCATTCGGCAAAGAAACAAGCAGACCTGTGGCAGCCAGGACCGAGACT
CACGAAGCCTCGACATCTCTCAAAACGCCTTTCCGTCCCTTTTCGGGGCG
TTCCATTGCCCTTCGGAGGACCGCAGCATGTGATGACTCATCCTCAATCG
ATCATCGCGGTCGATGGTAAATCGACAAGAACGTAAAATACGAAGTACAT
GCGAACGTGAGCATCATCGCCGCGCGCATGAACGAAAAATCATCGGCGCG
GCAGCTACGATTTTTTTCAGGACAAAAACCAGCTTCGTAATCACATTTAT
CAACAGACTTTTTTACCCTCACCACAATGCAACCAATGTCACAATTCGTC
GTCACAGCAACAGTAAAAGAAGGGGCACTATAGCTTCTATCCTCTCTTCG
CTGTTGATGGTATGTATACTACTTCTCTCTAGCCATTTCACCTTTCTCCA
TGTGAGTTCTTCTCTTCTGACGATGCTGCAGTTGCGTGCAGCACCAAAAT
CAAGGAAAGGGTTCAAACACGCGTTTTTTACCTGGCCGGTTCACCGCGAA
CTATTCTACTGCAAGCAGAAAGGAGCGCTGAACTCCTACAACACTTGCTA
CACTCGCCCCCATTCTCCCTCG
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Coding sequence (CDS) from alignment at S-firma_F_contig1010:6441..7312+

>mRNA_S-firma_F_contig1010.188.1 ID=mRNA_S-firma_F_contig1010.188.1|Name=mRNA_S-firma_F_contig1010.188.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=918bp|location=Sequence derived from alignment at S-firma_F_contig1010:6441..7312+ (Sphaerotrichia firma ET2_F female)
ATGGTAAATCGACAAGAACGTAAAATACGAAGTACATGCGAACGTGAGCA
TCATCGCCGCGCGCATGAACGAAAAATCATCGGCGCGGCAGCTACGATTT
TTTTCAGGACAAAAACCAGCTTCGTAATCACATTTATCAACAGACTTTTT
TACCCTCACCACAATGCAACCAATGTCACAATTCGTCGTCACAGCAACAG
TAAAAGAAGGGGCACTATAGCTTCTATCCTCTCTTCGCTGTTGATGGTAT
GTATACTACTTCTCTCTAGCCATTTCACCTTTCTCCATGTGAGTTCTTCT
CTTCTGACGATGCTGCAGTTGCGTGCAGCACCAAAATCAAGGAAAGGGTT
CAAACACGCGTTTTTTACCTGGCCGGTTCACCGCGAACTATTCTACTGCA
AGCAGAAAGGAGCGCTGAACTCCTACAACACTTGCTACACTCGCCCCCAT
TCTCCCTCGATGGTAAATCGACAAGAACGTAAAATACGAAGTACATGCGA
ACGTGAGCATCATCGCCGCGCGCATGAACGAAAAATCATCGGCGCGGCAG
CTACGATTTTTTTCAGGACAAAAACCAGCTTCGTAATCACATTTATCAAC
AGACTTTTTTACCCTCACCACAATGCAACCAATGTCACAATTCGTCGTCA
CAGCAACAGTAAAAGAAGGGGCACTATAGCTTCTATCCTCTCTTCGCTGT
TGATGGTATGTATACTACTTCTCTCTAGCCATTTCACCTTTCTCCATGTG
AGTTCTTCTCTTCTGACGATGCTGCAGTTGCGTGCAGCACCAAAATCAAG
GAAAGGGTTCAAACACGCGTTTTTTACCTGGCCGGTTCACCGCGAACTAT
TCTACTGCAAGCAGAAAGGAGCGCTGAACTCCTACAACACTTGCTACACT
CGCCCCCATTCTCCCTCG
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