mRNA_S-firma_F_contig1112.1485.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1112.1485.1
Unique NamemRNA_S-firma_F_contig1112.1485.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1112.1485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1112contigS-firma_F_contig1112:20457..20903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.7816703-UTR-S-firma_F_contig1112:20456..205461622815661.7816703-UTR-S-firma_F_contig1112:20456..20546Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 20457..20546 +
1696949486.4246728-UTR-S-firma_F_contig1112:20456..205461696949486.4246728-UTR-S-firma_F_contig1112:20456..20546Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1112 20457..20546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.8014445-CDS-S-firma_F_contig1112:20546..209031622815661.8014445-CDS-S-firma_F_contig1112:20546..20903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 20547..20903 +
1696949486.4379227-CDS-S-firma_F_contig1112:20546..209031696949486.4379227-CDS-S-firma_F_contig1112:20546..20903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 20547..20903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1112.1485.1prot_S-firma_F_contig1112.1485.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1112 20547..20903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1112.1485.1

>prot_S-firma_F_contig1112.1485.1 ID=prot_S-firma_F_contig1112.1485.1|Name=mRNA_S-firma_F_contig1112.1485.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=119bp
MLLIARDCAFFPNNGTLYDYAAVFPALSFALGLPPSYSRLGYLCLRFCGV
SQHVTSNGSAFRFLSLLVELPVVRWLPVGECCMNTLAWNDCFHLAFTRPP
PSHTRTVRLSSICNATRRH
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mRNA from alignment at S-firma_F_contig1112:20457..20903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1112.1485.1 ID=mRNA_S-firma_F_contig1112.1485.1|Name=mRNA_S-firma_F_contig1112.1485.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=447bp|location=Sequence derived from alignment at S-firma_F_contig1112:20457..20903+ (Sphaerotrichia firma ET2_F female)
GGTGGGGGTGGGCATCGCTTTTGATGTCGCAGTTAGGGGGCTGAAAGTAA
TGTCGCCAGCATTCACATCGCGGTGTTTATTCCTTAGTTGATGTTGCTGA
TCGCACGCGACTGCGCGTTTTTCCCCAACAACGGTACGCTGTATGACTAC
GCTGCGGTTTTCCCTGCTTTATCCTTTGCTCTTGGGTTACCTCCATCTTA
CTCTAGACTTGGGTATCTCTGCCTTCGGTTTTGTGGCGTCAGCCAACATG
TAACGTCAAATGGCAGCGCTTTTCGGTTTCTGTCTTTGCTGGTCGAGTTA
CCGGTAGTTCGTTGGCTCCCTGTGGGTGAATGTTGCATGAACACCCTTGC
TTGGAATGACTGCTTTCACCTGGCTTTTACCCGGCCTCCTCCATCACACA
CACGCACGGTCCGACTTTCATCAATCTGCAATGCTACGCGTCGCCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1112:20457..20903+

>mRNA_S-firma_F_contig1112.1485.1 ID=mRNA_S-firma_F_contig1112.1485.1|Name=mRNA_S-firma_F_contig1112.1485.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=714bp|location=Sequence derived from alignment at S-firma_F_contig1112:20457..20903+ (Sphaerotrichia firma ET2_F female)
ATGTTGCTGATCGCACGCGACTGCGCGTTTTTCCCCAACAACGGTACGCT
GTATGACTACGCTGCGGTTTTCCCTGCTTTATCCTTTGCTCTTGGGTTAC
CTCCATCTTACTCTAGACTTGGGTATCTCTGCCTTCGGTTTTGTGGCGTC
AGCCAACATGTAACGTCAAATGGCAGCGCTTTTCGGTTTCTGTCTTTGCT
GGTCGAGTTACCGGTAGTTCGTTGGCTCCCTGTGGGTGAATGTTGCATGA
ACACCCTTGCTTGGAATGACTGCTTTCACCTGGCTTTTACCCGGCCTCCT
CCATCACACACACGCACGGTCCGACTTTCATCAATCTGCAATGCTACGCG
TCGCCACATGTTGCTGATCGCACGCGACTGCGCGTTTTTCCCCAACAACG
GTACGCTGTATGACTACGCTGCGGTTTTCCCTGCTTTATCCTTTGCTCTT
GGGTTACCTCCATCTTACTCTAGACTTGGGTATCTCTGCCTTCGGTTTTG
TGGCGTCAGCCAACATGTAACGTCAAATGGCAGCGCTTTTCGGTTTCTGT
CTTTGCTGGTCGAGTTACCGGTAGTTCGTTGGCTCCCTGTGGGTGAATGT
TGCATGAACACCCTTGCTTGGAATGACTGCTTTCACCTGGCTTTTACCCG
GCCTCCTCCATCACACACACGCACGGTCCGACTTTCATCAATCTGCAATG
CTACGCGTCGCCAC
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