mRNA_S-firma_F_contig10075.145.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10075.145.1
Unique NamemRNA_S-firma_F_contig10075.145.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: D8LQY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 9.090e-59
Identity = 133/195 (68.21%), Postives = 144/195 (73.85%), Query Frame = 1 
Query:    1 AAAAEPDAIDVGTTPNYPPYIHQQLREQHERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRGHGVGGLLHGPGVGYSQPLSSS------YGMPASREQAAAAVAAITARQEAMSSAGHPKIPLPSAAVLAEHGVDMIGDSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            A AAEPD+IDVGTTP+YPP++ +Q+REQHER              XXXXXXXXXXXXXXXXXXXXX      G G  G   G GVG              YG+PASREQAAAAVAAI ARQEA++S  HPKIP+PSAAVL E+G  M GDSLSKNPWSRDEDDSLMRLVEQYG KRWSVIAMHLPGRIGKQCRER
Sbjct:    2 APAAEPDSIDVGTTPDYPPHVERQMREQHEREREKHHLAEQARSAXXXXXXXXXXXXXXXXXXXXXQALAAEGGGAVGYRFG-GVGXXXXXXXXXXXPMPYGLPASREQAAAAVAAIAARQEALASGAHPKIPMPSAAVLVENGGGMDGDSLSKNPWSRDEDDSLMRLVEQYGAKRWSVIAMHLPGRIGKQCRER 195
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A6H5L284_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L284_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.580e-16
Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:    7 AAEPDAIDVGTTPNYPPYIHQQLREQHERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRGHGVGGLLHGPGVGYSQPLSS----SYGMPASREQAAAAVAAITARQEAMSSAGHPKIPL 384
            AAEPD+IDVGTTP+YPP++  Q+REQHER                XXXXXXXXXXXXXXXXXXXX     G G  G   G G        S     YG+PASREQAAAAVAAI ARQEA++S  HPKIP+
Sbjct:  279 AAEPDSIDVGTTPDYPPHVELQMREQHEREREKHHLAEQVRSAAAXXXXXXXXXXXXXXXXXXXXALAAEGGGAVGGYQGFGXXXXXXXXSLPPMPYGLPASREQAAAAVAAIAARQEALASGAHPKIPM 408
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A2P4Y2W3_9STRA (R2R3 Myb protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2W3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.190e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   45 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 90
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A3R7G675_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G675_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.040e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   87 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 132
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: H3H745_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H745_PHYRM)

HSP 1 Score: 83.6 bits (205), Expect = 2.130e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   74 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 119
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: D0N805_PHYIT (Myb-like DNA-binding protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N805_PHYIT)

HSP 1 Score: 83.6 bits (205), Expect = 2.140e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:  100 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 145
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A225WNS1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNS1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.150e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   83 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 128
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: G4YSZ1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora sojae TaxID=67593 RepID=G4YSZ1_PHYSP)

HSP 1 Score: 83.6 bits (205), Expect = 2.180e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   82 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 127
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A0W8DMT8_PHYNI (Histone-lysine N-methyltransferase setd3 n=23 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DMT8_PHYNI)

HSP 1 Score: 83.6 bits (205), Expect = 2.200e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:  100 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 145
[Close]
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Match: A0A6A3UHX4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UHX4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.240e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  430 DSLSKNPWSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER 567
            DS SK PW+R+E+D LM+LV+QYG KRWS+IAMHLPGR+GKQCRER
Sbjct:   75 DSNSKRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRER 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10075.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQY0_ECTSI9.090e-5968.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L284_9PHAE6.580e-1657.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4Y2W3_9STRA1.190e-1576.09R2R3 Myb protein (Fragment) n=1 Tax=Phytophthora p... [more]
A0A3R7G675_9STRA2.040e-1576.09Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3H745_PHYRM2.130e-1576.09Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
D0N805_PHYIT2.140e-1576.09Myb-like DNA-binding protein, putative n=1 Tax=Phy... [more]
A0A225WNS1_9STRA2.150e-1576.09Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4YSZ1_PHYSP2.180e-1576.09Uncharacterized protein n=2 Tax=Phytophthora sojae... [more]
A0A0W8DMT8_PHYNI2.200e-1576.09Histone-lysine N-methyltransferase setd3 n=23 Tax=... [more]
A0A6A3UHX4_9STRA2.240e-1576.09Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10075contigS-firma_F_contig10075:3490..5316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LQY0
PFAMsMyb_DNA-binding,TTL
Max annot lvl2759|Eukaryota
KEGG koko:K09422,ko:K16599
Evalue1.49e-59
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko01000,ko03000,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10075.145.1prot_S-firma_F_contig10075.145.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10075 3490..5316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.4867768-CDS-S-firma_F_contig10075:3489..38721622815532.4867768-CDS-S-firma_F_contig10075:3489..3872Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 3490..3872 +
1696949394.3995054-CDS-S-firma_F_contig10075:3489..38721696949394.3995054-CDS-S-firma_F_contig10075:3489..3872Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 3490..3872 +
1622815532.5025873-CDS-S-firma_F_contig10075:4557..46361622815532.5025873-CDS-S-firma_F_contig10075:4557..4636Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 4558..4636 +
1696949394.412918-CDS-S-firma_F_contig10075:4557..46361696949394.412918-CDS-S-firma_F_contig10075:4557..4636Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 4558..4636 +
1622815532.5141065-CDS-S-firma_F_contig10075:5208..53161622815532.5141065-CDS-S-firma_F_contig10075:5208..5316Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 5209..5316 +
1696949394.4422746-CDS-S-firma_F_contig10075:5208..53161696949394.4422746-CDS-S-firma_F_contig10075:5208..5316Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 5209..5316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10075.145.1

>prot_S-firma_F_contig10075.145.1 ID=prot_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=190bp
AAAAEPDAIDVGTTPNYPPYIHQQLREQHEREREEHEALQRARAAQASAA
AAAAATTSAAAVTAAAAAAGYRGHGVGGLLHGPGVGYSQPLSSSYGMPAS
REQAAAAVAAITARQEAMSSAGHPKIPLPSAAVLAEHGVDMIGDSLSKNP
WSRDEDDSLMRLVEQYGPKRWSVIAMHLPGRIGKQCRER*
back to top

mRNA from alignment at S-firma_F_contig10075:3490..5316+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10075.145.1 ID=mRNA_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1827bp|location=Sequence derived from alignment at S-firma_F_contig10075:3490..5316+ (Sphaerotrichia firma ET2_F female)
GCGGCAGCGGCAGAACCGGACGCGATCGACGTGGGGACGACGCCAAACTA
CCCGCCCTACATCCATCAGCAGCTGCGGGAGCAGCACGAGCGGGAGCGGG
AGGAGCACGAGGCGCTGCAGCGGGCGCGCGCCGCGCAGGCGTCCGCGGCG
GCGGCGGCGGCGGCGACGACTTCGGCAGCGGCGGTGACGGCGGCGGCGGC
GGCGGCGGGGTACCGAGGACACGGCGTCGGAGGACTACTGCACGGCCCGG
GGGTGGGGTACTCGCAACCGCTGTCGAGCTCGTACGGCATGCCTGCGTCT
CGGGAGCAGGCGGCGGCGGCGGTGGCGGCGATTACGGCGCGGCAGGAGGC
CATGTCGTCCGCGGGCCACCCGAAGATCCCGCTGTGAGTTTTGCCGGCGA
GAGCACGCCTGTGTGTTGGGTGTGGGGGGGTAATCGTTTGTCATGTTTTC
TTGGTCGTGTTCACGAGGTACGTCCAATGCCGTTTTTCCTGGCCGTCGAC
AGACGCTCAGCGCACGTCGCGTGACTCTCGTGTTGTTGCGAATCTATTTT
TTGTGTGCATTTTGTGCTCAAGGTATGTTGGGGCGTTTTTTTCCTCGTTG
CTGCTGTGCTTTAGTGACCGATGGCGGGTCAGCTTGCGCTTTGTACGTAC
GACCCCCCCCCCCGAAGTCGAGTAGAATACTTGCGTTTCCCCCGCTTGGC
TTCCGTTCAGCACGACGGTGTCATTTCTAAAAGCGTGCGTCACTTTTCCT
GACATCGTGGTGTCCTTTTGTGCCACTGCTGCAAGCGCACGTACTAAAAC
GCGTTCGCGGGAGGACACTTACTTGTATTGCATGGCGTGTTGGGGAGTAC
GGTTTTGGAGGGCGGTGTCGCCGCCGGCCCCGACACCTTCCGTGCCCGTC
TTGGAGAAGGTCGCTCGAGAAAGGGGCTCTGATGGTGGAGGGGTGGGGAT
ATTTTTTTTGTCGCTACGGACGGCACGTGCGTGCGACTCGTCTGCTTTTG
TATCCAAGCCCTTGGATTCTTTTGTTGTCTTTCCTCCGTCTCACCCTGCC
TCCTCTGCCCCGGCGTAGGCCATCGGCGGCTGTTTTGGCGGAGCACGGAG
TCGACATGATCGGGGACAGTCTGAGCAAGAACCCCTGGTCGAGAGATGTG
AGTGGCAACAGTGCCGTGCCCTGTTTCTTGGCGGTGATGGTGACGGCGTG
CCAGGCTAATAATGGCTGTTTTTTTTTTTGTTATTTGGTGGACGTGCAGC
TCGCCCCCTGAATACTACACACACCGCAGGTTGGTGCAGTAGACACAGCA
GTAGACATAGCCCTGCGATTTTGCGGCAGCTGTGGTAGTTGATCAGTGTA
GTACGCCCGACCATTGCGGGTTTGGTGGAGAGATGCACAGCGCCTCCCGT
CGTGAGCGAGCCCAGCAAACCCGAACAAGCGTAAGAGTTGCCGTCGCGGG
AGCTTCCGCTCCTCGCCTGTGTCTCCACCGCCGTGCTTGCTTGAGTAGAG
TCGTGCGCGGTGTTTGTAGGCCCGAAGATGCCAAACGACTGCCTGCACTT
TGTCGGAAATCCCGGGCCTTATCGTCGGTCGTCCAACACACACGCCCGCG
CCGAGTGCCAAACGTACCTTTGGTGGATGCACGTGCTGAAACGGCGGTGG
TGCCGCCGCCGCCATGTTTTGCGGAAACCCGAAGCCCGTGCCCCCGACAC
CGATCAAACCAAAAACCAGGAGGACGACTCTTTGATGAGGCTGGTGGAGC
AGTACGGCCCGAAGCGCTGGTCGGTGATCGCGATGCACTTGCCGGGCCGG
ATCGGGAAACAGTGCCGCGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10075:3490..5316+

>mRNA_S-firma_F_contig10075.145.1 ID=mRNA_S-firma_F_contig10075.145.1|Name=mRNA_S-firma_F_contig10075.145.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1140bp|location=Sequence derived from alignment at S-firma_F_contig10075:3490..5316+ (Sphaerotrichia firma ET2_F female)
GCGGCAGCGGCAGAACCGGACGCGATCGACGTGGGGACGACGCCAAACTA
CCCGCCCTACATCCATCAGCAGCTGCGGGAGCAGCACGAGCGGGAGCGGG
AGGAGCACGAGGCGCTGCAGCGGGCGCGCGCCGCGCAGGCGTCCGCGGCG
GCGGCGGCGGCGGCGACGACTTCGGCAGCGGCGGTGACGGCGGCGGCGGC
GGCGGCGGGGTACCGAGGACACGGCGTCGGAGGACTACTGCACGGCCCGG
GGGTGGGGTACTCGCAACCGCTGTCGAGCTCGTACGGCATGCCTGCGTCT
CGGGAGCAGGCGGCGGCGGCGGTGGCGGCGATTACGGCGCGGCAGGAGGC
CATGTCGTCCGCGGGCCACCCGAAGATCCCGCTGCGGCAGCGGCAGAACC
GGACGCGATCGACGTGGGGACGACGCCAAACTACCCGCCCTACATCCATC
AGCAGCTGCGGGAGCAGCACGAGCGGGAGCGGGAGGAGCACGAGGCGCTG
CAGCGGGCGCGCGCCGCGCAGGCGTCCGCGGCGGCGGCGGCGGCGGCGAC
GACTTCGGCAGCGGCGGTGACGGCGGCGGCGGCGGCGGCGGGGTACCGAG
GACACGGCGTCGGAGGACTACTGCACGGCCCGGGGGTGGGGTACTCGCAA
CCGCTGTCGAGCTCGTACGGCATGCCTGCGTCTCGGGAGCAGGCGGCGGC
GGCGGTGGCGGCGATTACGGCGCGGCAGGAGGCCATGTCGTCCGCGGGCC
ACCCGAAGATCCCGCTGCCATCGGCGGCTGTTTTGGCGGAGCACGGAGTC
GACATGATCGGGGACAGTCTGAGCAAGAACCCCTGGTCGAGAGATGCCAT
CGGCGGCTGTTTTGGCGGAGCACGGAGTCGACATGATCGGGGACAGTCTG
AGCAAGAACCCCTGGTCGAGAGATGAGGACGACTCTTTGATGAGGCTGGT
GGAGCAGTACGGCCCGAAGCGCTGGTCGGTGATCGCGATGCACTTGCCGG
GCCGGATCGGGAAACAGTGCCGCGAGAGGTGAGAGGACGACTCTTTGATG
AGGCTGGTGGAGCAGTACGGCCCGAAGCGCTGGTCGGTGATCGCGATGCA
CTTGCCGGGCCGGATCGGGAAACAGTGCCGCGAGAGGTGA
back to top