mRNA_S-firma_F_contig11084.1439.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11084.1439.1
Unique NamemRNA_S-firma_F_contig11084.1439.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11084.1439.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 9.660e-39
Identity = 83/108 (76.85%), Postives = 90/108 (83.33%), Query Frame = 2 
Query:    2 GVSGEERAEYAAVAEDVLGPFVDAAGRGEDLAYARREIAEAHMAVAVTDWAEGNSQSAKREAERALRALLEGKLGYVGKDEARFRREARSRRGGGGADAADDGVPVPL 325
            G +GEERAEYAA AE VL PFVDA+G+G DL+YARREIAEAHMAV+V DWAEGN  SAKREAE ALRALLEGKLGYV KDEA  RRE R+ RGGGG  A  +GVPVPL
Sbjct: 1183 GATGEERAEYAATAEYVLAPFVDASGKGGDLSYARREIAEAHMAVSVADWAEGNPISAKREAELALRALLEGKLGYVDKDEA-LRREGRAPRGGGGEGA--EGVPVPL 1287
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11084.1439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS90_ECTSI9.660e-3976.85eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11084contigS-firma_F_contig11084:3754..4532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.1600914-CDS-S-firma_F_contig11084:3753..38611622815657.1600914-CDS-S-firma_F_contig11084:3753..3861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 3754..3861 +
1696949483.1381376-CDS-S-firma_F_contig11084:3753..38611696949483.1381376-CDS-S-firma_F_contig11084:3753..3861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 3754..3861 +
1622815657.1710098-CDS-S-firma_F_contig11084:4313..45321622815657.1710098-CDS-S-firma_F_contig11084:4313..4532Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 4314..4532 +
1696949483.1543128-CDS-S-firma_F_contig11084:4313..45321696949483.1543128-CDS-S-firma_F_contig11084:4313..4532Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11084 4314..4532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11084.1439.1prot_S-firma_F_contig11084.1439.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11084 3754..4532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11084.1439.1

>prot_S-firma_F_contig11084.1439.1 ID=prot_S-firma_F_contig11084.1439.1|Name=mRNA_S-firma_F_contig11084.1439.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=109bp
RRLRGGEGRVRGGRGGRAGPVRGRRGEGGGPGVRAEGDRRGPHGGGGNRL
GGGQLPVRQERGRAGPARAAGGQAGVRRQGRGPVPAGGEEPPGGRRRGRG
GRRGAGAPR
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mRNA from alignment at S-firma_F_contig11084:3754..4532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11084.1439.1 ID=mRNA_S-firma_F_contig11084.1439.1|Name=mRNA_S-firma_F_contig11084.1439.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=779bp|location=Sequence derived from alignment at S-firma_F_contig11084:3754..4532+ (Sphaerotrichia firma ET2_F female)
CGGCGTCTCCGGGGAGGAGAGGGCCGAGTACGCGGCGGTCGCGGAGGACG
TGCTGGGCCCGTTCGTGGACGCCGCGGGGAGGGGGGAGGACCTGGCGTAC
GCGCGGAGGTGGGGGTTTCGTGGGGGGTTGGGGGGGGGGGGTTGTTGTCG
CGTGCGGGGTTCGGGCTCGTTTTTTTGGCGTCGTGGGTTTTGATGTGGTT
GGTTGTGGTGTTTGTTGTTGTTGTTGTTTGGTGGATTGCGGCGAAGAGCG
TGGCGCAAGCCCGGGTGAGGAAGAGGAAGGGGTCAAAGGCCAGCAGGCGG
ATACATATCGTCGTGAGGTGTGGCGGTGGTGCGATGTGTATTTGAGAACA
GGCGAAGGGTCTTTTACGGTACCGAACCAGGCACACGTTTTCTTGTTGTT
GTGTGTCTTGTGTGCTCCCTCCCGTCTTTCGACCACCCACCGCCTACAAC
GACGCCATCATCATGTTTCCCGTCCCCGTGACCCCCCCCCCCCCCCCCCC
CCCCCCCCCGTTCGCATGTTCGCATCCGCGCGCGATCTCGTTTCGTCCGA
TCCGAAACAGGGAGATCGCAGAGGCCCACATGGCGGTGGCGGTAACCGAC
TGGGCGGAGGGCAACTCCCAGTCCGCCAAGAGAGAGGCCGAGCGGGCCCT
GCGCGCGCTGCTGGAGGGCAAGCTGGGGTACGTCGGCAAGGACGAGGCCC
GGTTCCGGCGGGAGGCGAGGAGCCGCCGGGGGGGCGGCGGCGCGGACGCG
GCGGACGACGGGGTGCCGGTGCCCCTCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig11084:3754..4532+

>mRNA_S-firma_F_contig11084.1439.1 ID=mRNA_S-firma_F_contig11084.1439.1|Name=mRNA_S-firma_F_contig11084.1439.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=654bp|location=Sequence derived from alignment at S-firma_F_contig11084:3754..4532+ (Sphaerotrichia firma ET2_F female)
CGGCGTCTCCGGGGAGGAGAGGGCCGAGTACGCGGCGGTCGCGGAGGACG
TGCTGGGCCCGTTCGTGGACGCCGCGGGGAGGGGGGAGGACCTGGCGTAC
GCGCGGAGCGGCGTCTCCGGGGAGGAGAGGGCCGAGTACGCGGCGGTCGC
GGAGGACGTGCTGGGCCCGTTCGTGGACGCCGCGGGGAGGGGGGAGGACC
TGGCGTACGCGCGGAGGGAGATCGCAGAGGCCCACATGGCGGTGGCGGTA
ACCGACTGGGCGGAGGGCAACTCCCAGTCCGCCAAGAGAGAGGCCGAGCG
GGCCCTGCGCGCGCTGCTGGAGGGCAAGCTGGGGTACGTCGGCAAGGACG
AGGCCCGGTTCCGGCGGGAGGCGAGGAGCCGCCGGGGGGGCGGCGGCGCG
GACGCGGCGGACGACGGGGTGCCGGTGCCCCTCGGGGAGATCGCAGAGGC
CCACATGGCGGTGGCGGTAACCGACTGGGCGGAGGGCAACTCCCAGTCCG
CCAAGAGAGAGGCCGAGCGGGCCCTGCGCGCGCTGCTGGAGGGCAAGCTG
GGGTACGTCGGCAAGGACGAGGCCCGGTTCCGGCGGGAGGCGAGGAGCCG
CCGGGGGGGCGGCGGCGCGGACGCGGCGGACGACGGGGTGCCGGTGCCCC
TCGG
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