mRNA_S-firma_F_contig1101.1357.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1101.1357.1
Unique NamemRNA_S-firma_F_contig1101.1357.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: D7G6D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D4_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 2.570e-86
Identity = 154/251 (61.35%), Postives = 186/251 (74.10%), Query Frame = -1 
Query: 2535 VVLGVKVSWCSWRRSPPTWPILLGEAAIGSAGLAHYLAREDGHSEAKVLEAHVIALERSLGPFFRGVQTCMRMVRCSQTLNFGLRLSVPMPPVARMEGRLPAAGSSR-PDQPGVALRELRSVLMDALEGGVRQASALDNREGCAGAGSGGDTDAFFTSAGQKIDAAKCRTSHVLADLVGRETQLVADLRRFVAAVAAKVNGATAEPDVWGLWWDSQLAEVSETVREMANYFEAAGERWVKQLDQAPHPFQP 3284
            +++   VSWCSWRRS P+W +LLGE AIGSAG+AHYLAR+DGH+EAKVLEAH++ALERSLGPFFRGV  CMRMV+CSQTL+FGLRLS+PMPPVARMEGRLPA GS   P +   ALR+LRSV+MD LEGGV QA+ L  +E C      GDTD F  S GQ  D+   ++   L+DL G E +LV DLRRF+A VAA+V G   EP++WGLWWDSQL +VSE + E+A YFEAA  +    +     PF P
Sbjct:  208 IMVAAAVSWCSWRRSSPSWLLLLGEVAIGSAGVAHYLARDDGHAEAKVLEAHLVALERSLGPFFRGVHACMRMVKCSQTLSFGLRLSIPMPPVARMEGRLPATGSGGLPGRAEAALRDLRSVVMDVLEGGVEQANVLQLKERC------GDTDGFLESGGQASDSGGRQSMQSLSDLAGTERRLVVDLRRFLAIVAARVEGVMVEPEMWGLWWDSQLVDVSEALAELARYFEAASGKLETAIGCGGLPFPP 452
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A7S1BH14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BH14_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.230e-48
Identity = 92/197 (46.70%), Postives = 133/197 (67.51%), Query Frame = 3 
Query:  303 KLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRGDDLEYFLPPIARPK-VPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTRAPTFPLD 890
            K GAV VTPRN YRL++ G+A LL+PGG +E  H K + Y++FWPEK++FVRIAA  NA+I+P +AVG+ADS++I  D  ++ +LPFG+GE++  +  + P AR     E F+ P A P  +PARHYFVFGQ     +V+ +D EAC  +Y +TR  +  G   +L AR+HDPY +  +R++ E     +APTF ++
Sbjct:  470 KFGAVEVTPRNYYRLMQTGQAALLFPGGVREVFHGKDEAYKLFWPEKTDFVRIAAKFNATIIPVSAVGAADSVNILIDPPDMLNLPFGLGERLANSSAAAPIARFDRAEERFVAPFALPNGLPARHYFVFGQPRDAGSVDHRDAEACARLYRETREELERGFDDVLRAREHDPYREAGRRLVEERARGRQAPTFSVE 666
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: B8BRN2_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRN2_THAPS)

HSP 1 Score: 197 bits (500), Expect = 4.360e-48
Identity = 94/205 (45.85%), Postives = 143/205 (69.76%), Query Frame = 3 
Query:  291 EVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEK-SEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRG--DDLEYFLPPIARPK-VPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYG-DGAKRILYETVMRTRAPTFPLD 890
            ++    GAV VTP+N YRL++  +AVLL+PGG KEALH KG++Y++FWP+K ++FVR+AA  NA+IVP +A+G+ADS+DI  D +E+  LPFG+G+ ++    +   AR    D  E F+PP+A PK  PARHYF+FG+   TS+++ ++++ACQ +YE+  + +   I  LL+AR+ DP+  DG KR  Y+ +     PTFP++
Sbjct:  636 DLFSMFGAVKVTPKNFYRLLQTNQAVLLFPGGVKEALHGKGEDYEVFWPDKKTDFVRVAARFNATIVPISAIGAADSVDIVLDAKELLDLPFGIGDNLKNFNANATSARYDTQDGEELFVPPLAVPKPFPARHYFLFGRAFDTSSIDPQNKDACQTMYEEIENELRSDIDALLAARERDPFALDGGKRAWYQRLFGKDPPTFPVE 840
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 190 bits (482), Expect = 2.070e-46
Identity = 102/207 (49.28%), Postives = 142/207 (68.60%), Query Frame = 3 
Query:  291 EVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRGD-----DLEYFLPPIARPKVP-ARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTR-APTFPLD 890
            E M   GAVPV+ +NM+RL++  EAVLL+PGG +EA  ++G+EYQ+FWPEKSEF+R+AA   A+IVPFAAVG  DS++I AD +++ ++P  +G+ ++     LP+AR+G      + E F+ P+A PK+P  R YFVF Q I TS  + KDR+ C  +Y  T++SV  GI +LL  R+ DPYG+   R LYE   R R APTFPL+
Sbjct:  514 EFMSTFGAVPVSAKNMHRLLQNKEAVLLFPGGVREAYKRRGEEYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSQQLEAMPV-LGDMVKRRAGGLPQARKGVAAASFEEESFVAPLATPKLPPGRLYFVFQQPIQTSPEDLKDRQRCDDMYRATKASVEEGIAWLLQKRKQDPYGEFLPRQLYEAAYRGRQAPTFPLN 719
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A835YY57_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY57_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.870e-46
Identity = 99/218 (45.41%), Postives = 139/218 (63.76%), Query Frame = 3 
Query:  285 VGEVMGKLGAVPVTPRNM---------YRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRGDDLEYFLPPIARPKVPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTRAPTFPLDAADFSSL 911
            +GE    +GAV V PR +         Y+L+KA EAVLL+PGGA+EALH +G++YQ+FWPEKSEFVR+AA  NA+I+P +AVG AD++ I AD  +++ LPFG+G + R A ++ P AR     E    P+  P++P R YF+FGQ I  S  +    E   A+Y + + +VAGGI YL +AR+ DP  D   R+  E   R +AP+F L+AA +  L
Sbjct:  606 LGEQYAAVGAVAVNPRKVFFDVYMLIFYKLMKAKEAVLLFPGGAREALHGRGEDYQLFWPEKSEFVRLAARFNATIIPVSAVGCADALSILADSRDLYGLPFGLGRRARAATETFPSARDPRLFEGAPIPVPAPRLPERFYFLFGQPIALSPSDAATEEDEAALYARVKGAVAGGIEYLRAARRRDPSADALARLASEAATRAQAPSFALNAAPWRHL 823
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: D7G6D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D5_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.300e-45
Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 3 
Query:  516 SIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRGDDLEYFLPPIARPKVPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTR 869
            S+ +W DLEEIFSLPFGVGEKM++A  ++PRAR+GD+ EYFLPPIARPKVPARHYFVFG  I TS V+EKDR  CQA YE T+S V  GI  LL +R+ DPY DGAKR LYE+VM+T+
Sbjct:    2 SVALWMDLEEIFSLPFGVGEKMKDAADAIPRARQGDNQEYFLPPIARPKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISLLLESRKQDPYRDGAKRWLYESVMKTQ 119
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A7S4HRM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRM0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.710e-45
Identity = 93/197 (47.21%), Postives = 132/197 (67.01%), Query Frame = 3 
Query:  309 GAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRAR-RGDDL-EYFLPPIARPK-VPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTRAPTFPLD 890
            GAV VTPRN YRL++ G+  LL+PGG +E  H K + +Q+FWPEK +FVRIAA  NA++VP +AVG+ADS++I  D  +I  LPFG+GE+      ++  AR  GD+  E F PP A PK +PARHYFVFG  + T +++  D+E C+  Y+  +S +  G   +L AR++DP+ D A+RI +E V    APTF ++
Sbjct:  526 GAVMVTPRNYYRLMQTGQNALLFPGGVREVFHGKDEAHQLFWPEKVDFVRIAAKWNATVVPISAVGAADSVNILIDAPDILKLPFGIGERAANNSANVMSARFDGDEQSELFQPPFALPKPLPARHYFVFGTPMDTEHLDHSDKEGCENFYDNVKSEMMRGFDDILQARENDPWKDTARRIAFEQVTGKIAPTFSVN 722
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: E1Z887_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z887_CHLVA)

HSP 1 Score: 188 bits (477), Expect = 2.500e-45
Identity = 102/206 (49.51%), Postives = 140/206 (67.96%), Query Frame = 3 
Query:  291 EVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRG----DDLEYFLPPIARPKVP-ARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTR-APTFPLD 890
            + M   GAVPV+  NM+RL++AGE+VLL+PGG +EA  ++G+EY++FWPEKSEF+R+AA   A+IVPFAAVG  DS++I AD +++ ++P  VG+ +R     LP+ARRG     + E F+ P+A P++P  R YF+F Q I TS  + +DRE C  +Y  TR SV  G+ +L   RQ DPY D   R LYE   R R APTFPL+
Sbjct:  615 DFMTTFGAVPVSAFNMHRLLQAGESVLLFPGGVREAYKRRGEEYRLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNILADSQQLEAMPV-VGDMLRRRAGGLPQARRGVSASGEEESFVAPLAVPRLPPGRLYFLFQQPIHTSPDDLQDRERCDELYRATRQSVEDGLAWLQRQRQRDPYKDFLPRQLYEAAYRGRQAPTFPLN 819
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.680e-44
Identity = 93/225 (41.33%), Postives = 139/225 (61.78%), Query Frame = 3 
Query:  228 LQHSGDNKSFTQPALMSGRVGEVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRGDDLEYFLPPIARPKVPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTR-APTFPLDAAD 899
            L H        QP  +   V +V    GAVPV+ +N+++L++  EAVLL+PGGA+EA H +G+E Q+FWP+KSE +R+A S NA IVPF+A+G+A+S ++  D  E    P  +G  +++    +P  R GDDL  F+ P+A P++P R YF+F   I T ++N+ DRE C  +Y   + ++  GI  LL AR+ D Y D  +R+ YE +   + APTFPL  A+
Sbjct:  436 LGHPAIFDGRAQPGPLGTFVRDVFSAFGAVPVSGKNLFKLLRQKEAVLLFPGGAREAYHLRGEENQLFWPDKSEAIRMAVSTNAIIVPFSAIGAAESFNVILDTRESLDSPL-IGPTVQQVASDMPSVRGGDDL--FVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYDDPVRRLAYEALSGGKPAPTFPLYVAN 657
[Close]
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Match: A0A8J4BCQ6_9CHLO (PlsC domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BCQ6_9CHLO)

HSP 1 Score: 184 bits (467), Expect = 4.050e-44
Identity = 103/229 (44.98%), Postives = 143/229 (62.45%), Query Frame = 3 
Query:  237 SGDNKSFT---QPALMSGRVGEVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEYQMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVGEKMREAGQSLPRARRG---DDL--EYFLPPIARPKVPARHYFVFGQEIPTSNVNEKDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVM----RTRAPTFPL 887
            +GD++S     + AL    +G +    GAV VTP  MYRL+ AGEAVLLYPGG +E   ++ ++Y++FWP +SEFVR+AA   A+I+P +AVG  DS++I  D ++I + P   G + RE   ++PRAR G   +D   E F+PP+  P VP+R YF+FG+ + TS    KDR AC  +Y++ RS V GGI YLL  R+ DPY D  +R +YE       R  APTF L
Sbjct:  583 AGDSRSIPSGGEEALNIAFMGNMFQSFGAVRVTPTAMYRLLAAGEAVLLYPGGVREGFKRRNEKYELFWPARSEFVRMAARFGATIIPVSAVGLEDSLEILLDSDDIRNSPLW-GIRAREQAAAMPRARVGLAAEDAPDETFIPPVIAPAVPSRFYFLFGRPVHTSPALYKDRAACDQLYQEVRSEVDGGITYLLRKREQDPYRDFLRRYVYEQNPPFGPRRVAPTFKL 810
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1101.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D4_ECTSI2.570e-8661.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1BH14_9STRA3.230e-4846.70Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
B8BRN2_THAPS4.360e-4845.85AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
A0A2P6TRL1_CHLSO2.070e-4649.28Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]
A0A835YY57_9STRA2.870e-4645.41Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
D7G6D5_ECTSI1.300e-4568.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4HRM0_9STRA1.710e-4547.21Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
E1Z887_CHLVA2.500e-4549.51Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A835Z8H3_9STRA2.680e-4441.33Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID... [more]
A0A8J4BCQ6_9CHLO4.050e-4444.98PlsC domain-containing protein n=1 Tax=Volvox afri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1101contigS-firma_F_contig1101:19449..25319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog35128.Thaps20950
Max annot lvl2836|Bacillariophyta
Evalue1.29e-55
EggNOG OGsCOG0204@1|root,2QQUD@2759|Eukaryota,2XC8C@2836|Bacillariophyta
Descriptionfatty alcohol metabolic process
COG categoryI
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001460.1
Exons7
Model size3953
Cds size690
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.3582175-UTR-S-firma_F_contig1101:19448..208321622815649.3582175-UTR-S-firma_F_contig1101:19448..20832Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 19449..20832 -
1696949478.3039067-UTR-S-firma_F_contig1101:19448..208321696949478.3039067-UTR-S-firma_F_contig1101:19448..20832Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 19449..20832 -
1622815649.3760831-UTR-S-firma_F_contig1101:21089..214451622815649.3760831-UTR-S-firma_F_contig1101:21089..21445Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 21090..21445 -
1696949478.3142712-UTR-S-firma_F_contig1101:21089..214451696949478.3142712-UTR-S-firma_F_contig1101:21089..21445Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 21090..21445 -
1622815649.3878117-UTR-S-firma_F_contig1101:21563..228141622815649.3878117-UTR-S-firma_F_contig1101:21563..22814Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 21564..22814 -
1696949478.3256679-UTR-S-firma_F_contig1101:21563..228141696949478.3256679-UTR-S-firma_F_contig1101:21563..22814Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 21564..22814 -
1622815649.458935-UTR-S-firma_F_contig1101:25047..253191622815649.458935-UTR-S-firma_F_contig1101:25047..25319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 25048..25319 -
1696949478.3799646-UTR-S-firma_F_contig1101:25047..253191696949478.3799646-UTR-S-firma_F_contig1101:25047..25319Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1101 25048..25319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.3983545-CDS-S-firma_F_contig1101:22814..229071622815649.3983545-CDS-S-firma_F_contig1101:22814..22907Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 22815..22907 -
1696949478.3351703-CDS-S-firma_F_contig1101:22814..229071696949478.3351703-CDS-S-firma_F_contig1101:22814..22907Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 22815..22907 -
1622815649.4141908-CDS-S-firma_F_contig1101:23309..235161622815649.4141908-CDS-S-firma_F_contig1101:23309..23516Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 23310..23516 -
1696949478.3442745-CDS-S-firma_F_contig1101:23309..235161696949478.3442745-CDS-S-firma_F_contig1101:23309..23516Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 23310..23516 -
1622815649.4241095-CDS-S-firma_F_contig1101:23756..239011622815649.4241095-CDS-S-firma_F_contig1101:23756..23901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 23757..23901 -
1696949478.355101-CDS-S-firma_F_contig1101:23756..239011696949478.355101-CDS-S-firma_F_contig1101:23756..23901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 23757..23901 -
1622815649.4356122-CDS-S-firma_F_contig1101:24486..245931622815649.4356122-CDS-S-firma_F_contig1101:24486..24593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 24487..24593 -
1696949478.3634021-CDS-S-firma_F_contig1101:24486..245931696949478.3634021-CDS-S-firma_F_contig1101:24486..24593Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 24487..24593 -
1622815649.445605-CDS-S-firma_F_contig1101:24909..250471622815649.445605-CDS-S-firma_F_contig1101:24909..25047Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 24910..25047 -
1696949478.3716846-CDS-S-firma_F_contig1101:24909..250471696949478.3716846-CDS-S-firma_F_contig1101:24909..25047Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1101 24910..25047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1101.1357.1prot_S-firma_F_contig1101.1357.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1101 22815..25047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1101.1357.1

>prot_S-firma_F_contig1101.1357.1 ID=prot_S-firma_F_contig1101.1357.1|Name=mRNA_S-firma_F_contig1101.1357.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=230bp
MSGRVGEVMGKLGAVPVTPRNMYRLVKAGEAVLLYPGGAKEALHQKGQEY
QMFWPEKSEFVRIAASCNASIVPFAAVGSADSIDIWADLEEIFSLPFGVG
EKMREAGQSLPRARRGDDLEYFLPPIARPKVPARHYFVFGQEIPTSNVNE
KDREACQAVYEQTRSSVAGGIRYLLSARQHDPYGDGAKRILYETVMRTRA
PTFPLDAADFSSLRRPAESACTSTAGSRE*
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mRNA from alignment at S-firma_F_contig1101:19449..25319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1101.1357.1 ID=mRNA_S-firma_F_contig1101.1357.1|Name=mRNA_S-firma_F_contig1101.1357.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5871bp|location=Sequence derived from alignment at S-firma_F_contig1101:19449..25319- (Sphaerotrichia firma ET2_F female)
TACACACTAGGGTCGAGGTAAAGGGTTGAACCTTTGCGCTCGATCTAAGG
TGGATATTTGCCTATCCGATGCAACAGAAGAAGGAACCACCAAAACGCCT
CGAAGCTGCCGTAACCATATCGCTTGTGTAAGCGGTTGTTCAGCTTGTCC
GTCACCTGTGTTCCGTTCCGCTCCCCCGTGAAGGACCACCGTTCATAGTC
GTCACTCGTTTGCCCCCGACGTCAGACCTCCAGCATTCCGGAGATAACAA
AAGCTTCACGCAACCAGCACTAATGAGCGGACGCGTGGGCGAGGTCATGG
GCAAGCTCGGTGCGGTGCCCGTCACCCCAAGAAACATGTATCGGTTAGTG
AAGGCTGGTGAGGCCGTGCTACTGTATCCGGGCGGGGCAAAGGAAGCACT
TCATCAAAAGGTGAGCACTTGCAATATTCTCGCACCTTGTTTCAACCGCC
TTCATCGATACCCTTCTGATGTCTCGACGATCCTGGGATCGCTCAATGTA
TGTGCTCAATACAACGTCCCGGGCATCGTTTGGAGCGGGGGTGGCAACCC
AGCGGTGCATGCACGGCACATTCCGCTGGCGGCAGTATAACGCCGCTAGT
AAGATACAGCAGTGAATCCCCGAACTAAGCCGTTGCGTATAGCGGCCAAA
CCTCGAGGAAATCCCCTGCAGCCTATATCCTGGCCATTCATTTTCTCAAT
TACAACCAACGCTCTCGCGTGCCCAGGGTCAAGAGTACCAAATGTTCTGG
CCGGAAAAGAGCGAGTTTGTTCGAATTGCGGCATCCTGCAACGCGTCGAT
CGTGCCTTTTGCTGCGGTTGGCTCGGCCGACAGGTAAATTACATTCCTTG
TTCCACCTTATTACCGTGTCTTCCTTGGTAAATTTCAATACGCACGATAA
CAGGCGACGGAGGCTATCGATGTAGTCGGCAGCAACACATTGTCCACGAA
GTGTTACGCGGGTTCCGATTTCCGAGAAAACATGCTGTTGCCCCTTTGGC
AAACCCATTTTCATACATAGACTACATGTATGTGTGTGTGTTCTTCCCAC
CATCTGTTTTGGTAACACTCCCTCCGATCAAGGCGAGACGTGTCATTCAC
TTTGCAGTGTATTCAGAGGACTACACTTTCAGCGGATTTTTCTGTCCATC
TGAACCAACCGAGGTCACACAGGAGGGGGCGAACACGGGGGGTTCTTTTC
TTCTTCATTACTTCGTATTGCTACAATACTTTCTTTAACTAACGCCCCAC
TTCCTCTTGCTGCGGTGCTTGCCTTCATTTTTTATCGCGAGAAGGGGGTT
CAGTCAGTAGGTTCAGCCGTCCCTTTCCCTCGTCGACAATGAAGTCGACT
TTTAAGGTACAGAATTGACGAGCTACATAATAAACATGACACGTCTGTTC
CTGAATATTTTACTGTAGTATTGACATATGGGCGGATCTGGAGGAGATAT
TTTCACTGCCGTTTGGAGTTGGAGAGAAGATGCGGGAAGCCGGCCAGTCC
CTTCCCCGCGCCCGTCGCGGAGACGACCTGGAATACTTTCTGCCACCAAT
AGCTCGCCCAAAGGTGGACACAAACAATTTCCATGAGCTCATTTCCCTTC
CGTAAGTCTACTACGAACAAGCAAGCCTTGGTAGAGAGAAGGCAAGCAGA
TGGTTTTTCGTCACGTAAAATCGTCTGATTGAATGGACGCTTCCTCGCCT
TGAGTACCAAATGCGAGAGCTCGTTCGACCCACCCCTTCTCTGTCTAATC
ATTGGAACCTTGATTATGTAGACTAAGTATGTATCTCCCCTTTTCGGCAA
AAGGTGCCCGCAAGACATTACTTCGTGTTCGGTCAAGAGATCCCTACTTC
GAATGTGAACGAAAAGGACCGCGAAGCTTGCCAGGCCGTGTACGAGCAGA
CAAGGTCCTCCGTTGCCGGAGGAATACGTTACCTACTCTCGGCTAGGCAA
CACGACCCATACGGGGATGGAGCGAAAAGGATATTGTACGAGACTGTCAT
GAGGACACGGGTACGTAAGATTCAGTTTTTTTAACACGCCGTTTTTTTTT
TTTTTTACATGTAGACTAGGTCTTTGGTCTGTCGTGGATTCCATGTACAG
AAGTACATTCGGCTGCGAAACACAACATCTGGATACTTCAGCATTATCCA
GAATACGGCGTTCGGTCTCAGCTTGTTCGGGATACATACATACCGGGTTG
TGCCATGAAATACTCCACGTTGGCCACGAACAAGCAAACAGGAATTGAAG
CGACAAGAGTGCATGCATTCGATCTCATACATACATACCTCGTGGGTTGA
GGGAGTCGACAAACTCATGATGTATCGACGGCACATCTACAAATATAGAT
TTATCGTATCTGTTTTTTTCGACCAGCACAACTTGTTCCCGACCCTCTCC
GATTCCGCACAGGCGCCTACGTTCCCCCTCGATGCTGCCGACTTCAGCAG
TTTAAGGCGGCCTGCAGAGAGCGCGTGCACCTCTACAGCGGGTTCGCGTG
AATAAAGGGCGCACTTTGCGATCTGTTTATGTAAAGAGTGCCGTGTGTGC
TATTTACCTATGTAATCTTTCAAGAGAAGTCGACGACGTCGGGAGAGTCA
ACAAAGTAGTGCCAAAAAATATTTCAGGTCGCCGCGTCCGACATAGGAAT
GGTACGTATCTCAGCAGCAGAGGACCCTTGCACGACGACGGTCAAGATAC
AAGTAGTTCGGGGAAGTCGGGTGGGGTGGCTCACGGAGGCAGCCGTGTAC
GGGCTCTCCTTGAGCGTGATGGCTTTTGAGTGGAGAGTTCTTGACATGGC
ATGTTTGCCGCGCACCCGGCAGGTCCGCGTAGTAAATACTGGACAGGGAC
GAGCGAGAAGATGGTACTTCGAAGTATGTCCCCAGGGTTGACGACTCTGT
ACGTTCCACACAGCCATCAGTTGTATGCAGAACATCATTTTTCCTCGGTT
GGCATCAATGCCCATCCATGCTTGATACACAGGCTTACGGGTACGATTTA
CAGGGTTCGGATGCACCTACTTACACGCCTTGCTCTATCAGGATACAAAA
TACACAATTCACCTAACTAAAAGAAATATCGGAACATCGGCAGCGACGTA
CGCTCCAAGATCACCAAAAAAGAAGAACGCCAACAGGATCCTCTATCTAG
CAGTCTCTTCAGCAGCGTCGTCGTCGCCGTTGTCTTTCCCGTCTCCAATC
AACACACTGTCTCCCTCGTCATCGCTCGATGCGGCTGAAAATATCTCCTC
GTTCGCAGCCAATGAAAGTTGCGCTCGGAGCTCGGAAATGAGATTCTGAC
TACCCCTGCTTTCAGCTACTGGACATGCTTGCGCCGCCGGTGGGGTCGAC
AAGTCCAACTGTTCCACGCTCTGCTCTCCAACCATGTCGCTGCTTTCCCC
TTCCCCAAGGGACTGCTGACATTCCAAGGGAAGGTGTTTCTCGCAGATCG
GCGGGAGGGGTCTCGCACGAAGGACGGAGTCAAGTTCACCGACAAGCTGT
GCGCGAGAGCGTTCATCCACTAGTTCTTCGGATGTCGCGGTTGAAGCAGC
GGCGACTTCAGCTCTGTTACGGCCCGGGGAGGGCACCCCGACAAGGACGT
CCGTAACCCCCGGGCCCGTGTCGGGCATACTTTGCTGTGTGCCGGTAGCA
CTCTCGTCGCAGCTTCCGCCCTCAAACACGCGTGGGCCTTCTTCTCTCGG
AGTCGTCAAGGAAACCCACCCCACTCCCGCCTCCAAGTGACGAGAATTAT
CTGAATGTCGGTACCAGCGGGCGGGGTAACTTTAGGCAAGGAAGGATACG
CATGCACCCAATTTGCGACACACCGTAGCCAACAATCTAGCCACAACCAT
GAACATCTGTCGCAGCACCTGAAGGGTTCTCCGAGCTTGACGCGCCCAGA
TTCAGGTCAGCTTCGCTTTGGCCACCGTCGTTGGTATTGCACTTCACCAG
ATGCTCCGCGTTCTGCCATAGCTCGTGATCGCCGTCCTGGGGTCCAGTCG
ACAAGCGCGCATCGGCGAGACCTCGACGTACAACTTCCCACACATCCGCC
GTGCTCTTCGCAGGATCCCGTACTATGCTGTTCGCGTTGCTTTGGCATGA
GTAGAGCCGCACGAGGATTTCCTCGTAGTGTAGGCGCAGCGAAGAGAGTG
CTTCTGCCGCTGCTGCGACCTCGTCGCCATGGCTTGCCCCGCACGAGGCT
GAAAAGGGTGGGGAGCCTGATCCAATTGCTGCCTCCAACCTGGAATAAAT
TAACACCGGTAACACTGAGCCACCGCTCTGTACCTGGTACGTGTTTGCCG
CGCTTGCAAGTGAAAAACACAAATACTTCGTATGTGCAGTATCTTTGTGA
TTAGATTCTACATATGTATACAAACCAGGGCCGTAGATCAACGGCGAAGA
GGTACATCGATCGTTGGCTTGCCGCGGCGATGAGATATGCTACAAACAAT
AAAAGACGGCCCATCTTGGATTAACAATATAACGAAGTGACCCACCTTTC
ACCCGCGGCCTCGAAGTAATTCGCCATCTCCCTCACAGTCTCTGAAACCT
CTGCTAATTGGCTGTCCCACCACAGCCCCCACACATCGGGTTCCGCCGTG
GCTCCATTCACTTTCGCAGCCACCGCTGCAACAAACCGACGGAGATCAGC
CACAAGCTGTGTTTCCCTACCCACCAGATCCGCTAGGACGTGTGAGGTTC
GACATTTGGCTGCGTCGATTTTTTGGCCCGCGCTCGTGAAGAAGGCGTCG
GTGTCGCCGCCACTTCCTGCGCCGGCACACCCCTCCCGGTTGTCAAGAGC
ACTGGCCTGCCTCACTCCCCCTTCCAGAGCATCCATGAGAACGGACCTCA
ACTCTCGAAGGGCAACCCCTGGTTGATCCGGTCGGCTGCTTCCTGCAGCG
GGAAGGCGCCCCTCCATCCGAGCAACAGGCGGCATGGGCACGGACAGCCG
GAGGCCAAAGTTGAGCGTCTGGGAGCAACGCACCATGCGCATGCACGTTT
GTACCCCACGGAAAAAAGGACCGAGGGAACGCTCGAGCGCGATCACGTGG
GCCTCAAGCACCTTCGCTTCTGAGTGTCCGTCTTCCCGAGCAAGATAGTG
CGCCAGTCCGGCCGATCCAATCGCCGCTTCGCCCAGAAGGATTGGCCAGG
TCGGCGGCGACCGGCGCCAGCTGCACCATGACACTTTAACACCAAGCACG
ACATGGGTAGGGATGGGGTACGAGAAACACGAGAAATTAATTATGGTACA
GTTCGCGGCTCGCAAATACGAAACATAATTGAGAAGCAAACCCTCAAACT
TTCTCGAAAAACAAGAAAAAATACTTTAGCCTGAGTGACACCGAAAACTG
GGCGGCGACAAGAGCAAAAAGAAACCGCCAGCTTCGTTCACAGCCGAGAA
ATATGAGAACAAATATCCACCACTGATGCTGCGTCCGCTCCCAAAAAATT
AAGGCTCGAGCGTCGACCCGTGAAACCGACGTTTCTCATCTCCGGGTCGC
AACATCGGCGTGTCAGCATACATACGTCCTGTTACTTGCAGCCAAAGAAT
GTAGTCTACACGTCTACACCTCGCTCCACCATTGCCCGGCATGGTATGCG
TGGACACGCGAGCAGGCTCGATCCGAGAGGAGAAACACCTACGAAACACA
TCTCCCGAAGGGAATCCGTGCGGAGCGACAATCAGGAAGACGAGAACCCA
CAAAAGAAATGGTATATGTAGCGTTCGGGGCTTAGCGGAACCGAAACCAG
GTGCGGGTTCTCGCAGTGGTGCCAAGTTCTGTTGCACCTGCGGCGGCAAG
TAGGACCACCACGGTTGCCACGCCAGCGCCGCCGACTACTGTGCAAACGG
AGCCAATACGTCCCGGGAGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1101:19449..25319-

>mRNA_S-firma_F_contig1101.1357.1 ID=mRNA_S-firma_F_contig1101.1357.1|Name=mRNA_S-firma_F_contig1101.1357.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1380bp|location=Sequence derived from alignment at S-firma_F_contig1101:19449..25319- (Sphaerotrichia firma ET2_F female)
ATGAGCGGACGCGTGGGCGAGGTCATGGGCAAGCTCGGTGCGGTGCCCGT
CACCCCAAGAAACATGTATCGGTTAGTGAAGGCTGGTGAGGCCGTGCTAC
TGTATCCGGGCGGGGCAAAGGAAGCACTTCATCAAAAGATGAGCGGACGC
GTGGGCGAGGTCATGGGCAAGCTCGGTGCGGTGCCCGTCACCCCAAGAAA
CATGTATCGGTTAGTGAAGGCTGGTGAGGCCGTGCTACTGTATCCGGGCG
GGGCAAAGGAAGCACTTCATCAAAAGGGTCAAGAGTACCAAATGTTCTGG
CCGGAAAAGAGCGAGTTTGTTCGAATTGCGGCATCCTGCAACGCGTCGAT
CGTGCCTTTTGCTGCGGTTGGCTCGGCCGACAGGGTCAAGAGTACCAAAT
GTTCTGGCCGGAAAAGAGCGAGTTTGTTCGAATTGCGGCATCCTGCAACG
CGTCGATCGTGCCTTTTGCTGCGGTTGGCTCGGCCGACAGTATTGACATA
TGGGCGGATCTGGAGGAGATATTTTCACTGCCGTTTGGAGTTGGAGAGAA
GATGCGGGAAGCCGGCCAGTCCCTTCCCCGCGCCCGTCGCGGAGACGACC
TGGAATACTTTCTGCCACCAATAGCTCGCCCAAAGTATTGACATATGGGC
GGATCTGGAGGAGATATTTTCACTGCCGTTTGGAGTTGGAGAGAAGATGC
GGGAAGCCGGCCAGTCCCTTCCCCGCGCCCGTCGCGGAGACGACCTGGAA
TACTTTCTGCCACCAATAGCTCGCCCAAAGGTGCCCGCAAGACATTACTT
CGTGTTCGGTCAAGAGATCCCTACTTCGAATGTGAACGAAAAGGACCGCG
AAGCTTGCCAGGCCGTGTACGAGCAGACAAGGTCCTCCGTTGCCGGAGGA
ATACGTTACCTACTCTCGGCTAGGCAACACGACCCATACGGGGATGGAGC
GAAAAGGATATTGTACGAGACTGTCATGAGGACACGGGTGCCCGCAAGAC
ATTACTTCGTGTTCGGTCAAGAGATCCCTACTTCGAATGTGAACGAAAAG
GACCGCGAAGCTTGCCAGGCCGTGTACGAGCAGACAAGGTCCTCCGTTGC
CGGAGGAATACGTTACCTACTCTCGGCTAGGCAACACGACCCATACGGGG
ATGGAGCGAAAAGGATATTGTACGAGACTGTCATGAGGACACGGGCGCCT
ACGTTCCCCCTCGATGCTGCCGACTTCAGCAGTTTAAGGCGGCCTGCAGA
GAGCGCGTGCACCTCTACAGCGGGTTCGCGTGAATAAGCGCCTACGTTCC
CCCTCGATGCTGCCGACTTCAGCAGTTTAAGGCGGCCTGCAGAGAGCGCG
TGCACCTCTACAGCGGGTTCGCGTGAATAA
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