mRNA_S-firma_F_contig110.1330.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig110.1330.1 vs. uniprot
Match: D8LKZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ1_ECTSI) HSP 1 Score: 802 bits (2072), Expect = 3.120e-282 Identity = 427/620 (68.87%), Postives = 464/620 (74.84%), Query Frame = 1
Query: 22 MLRRLGLAKAPANGT--TDG--GKDAISVVSRP--DPYVQTRFFKVVYPGRVAVRANPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVVELKQPQGGFVFQRHGSRTLLEEVEALKVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHTSPVPQNSVVHACRRHTPPGSSVSFVELSGNKGWIVESAKERAVLEKSLDGRFIVENITGEYRDDAEAWYEVVVDSGVELLEAPDTTRGRMLELFLAGKSFCASERFQPPGQASTFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWYRVVYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHMLLQVATPEGVVRDSDDXXXXXXXXXXXXXXXXGLG---PLEQARRASKRHCGWVPSTSNGVQVVAETMEPWIERGLFAYQVVVDETLSARTGPHENAPGILQQLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVSSRRGRKNSMIRLPAFPHVDKTPRRFVVSAPDGVQTVVGPSYLAPPTGQLLPFGTEGVSEMVWSVEGWPGLRGSGDKKFVLLEGMGWVQLDAAGGE--GLLQEVDAGADAAPTPPSPXXXXXXXXXXXXHHRQENGSA 1848
ML+RLGL KA NG T+G G+ VVS P + + Q RF K SFG GDV+EV+GLAVAVPEGVVVELKQPQ GFVFQ+HG RTLLEEVEALKVEEGDWWYRV+HPAGARF KIPSL P+ PRHT VPQN+VVHACRRHTPPGSSV+FVELS NKGWIVES KE+AVLE+S DG+++VENITG YRDD+EAWY+VV +SGVELLEAPD RMLELFL GK+FC SERFQPP Q STFLKVKGREAWVVQR ESDGEEAC+KLPPPMDEAVEQWYRV YPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHMLLQVATPEGVVRDS LEQARR ++RHCGWVPSTSNG +VV VDETL A TGPH NAPG QQLPPYSVAAAATFLETGDGLEGFVQLAGTGSWV SRRG+ M+RLPAFP VDKTPRRFVVSAP GV+TVVGPS AP TGQLLP G EG SEMVWSV+GWPG RG GD++FVLLEGMGWVQLDA + G L+E+ GA PSP ++ENGS+
Sbjct: 34 MLQRLGLTKASVNGANGTEGANGEAKREVVSVPPVEEFEQARFLK----------------------SFGFGDVVEVRGLAVAVPEGVVVELKQPQSGFVFQKHGDRTLLEEVEALKVEEGDWWYRVVHPAGARFAKIPSLLPQTPRHTIAVPQNTVVHACRRHTPPGSSVTFVELSDNKGWIVESTKEKAVLEQSSDGKYMVENITGHYRDDSEAWYQVVDESGVELLEAPDAGSTRMLELFLPGKAFCVSERFQPPEQGSTFLKVKGREAWVVQRAESDGEEACKKLPPPMDEAVEQWYRVQYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHMLLQVATPEGVVRDSSSEYGETVDVYGSSSDDSDWDNEDELEQARRGARRHCGWVPSTSNGEEVV------------------VDETLLANTGPHVNAPGSPQQLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVLSRRGQDTKMVRLPAFPRVDKTPRRFVVSAPGGVETVVGPSPSAPRTGQLLPLGAEGSSEMVWSVKGWPGDRGVGDRRFVLLEGMGWVQLDAGTEQEGGPLREI--GAPPPXXQPSPFDGTREGAVDEQRQQEENGSS 611
BLAST of mRNA_S-firma_F_contig110.1330.1 vs. uniprot
Match: A0A7S2UXS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS7_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.640e-8 Identity = 78/314 (24.84%), Postives = 137/314 (43.63%), Query Frame = 1
Query: 130 FFKVVYPGRVAVRANPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVV----ELKQP--QGGFVFQR----HGSRTLLEEVEAL------KVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHTSPVPQNSVVHACRRHTP-PGSSVSFVELSGNKGWIVES-------------AKERAVLEKSLDGRFI-----VENITGEYRD-DAEAWYEVVVDSGVELLEAPDTTRGRMLELFLAGKSFCAS--ERFQPPGQAS-TFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWYRVVYPGGVRLRASPAF 954
F++VV+P VAVR P + G +G+V+E+ + + + P + G+VF+R + + +EEV+AL KV++ D++YRV+H GA+ + + RH +P +VV A RR P S + ++ ++G+I+E+ + + A E S G + E E D + +++VV + GV + + L A +F ++ + PG +F + WV R++ R++P ++ YRVVY GGV +R P F
Sbjct: 22 FYRVVHPKGVAVRETPDVEGRKTGTCLFYGEVVEISQKVKLLDDDTTYLRMDHFRDPWMRKGWVFERVRALNPETSRMEEVQALEPMKPPKVQQDDFFYRVIHQDGAQLA-VKARMDSELRHER-LPFGTVVEASRRVKPFEASDILYLRPDSHEGFILETPGGEMLLKAPPPASVDPAAEEASQRGEMLPTLERFEPQPAEQEDNEGTFFFQVVCEPGVFVRKEAKLCAQSTRTLLKAETTFTSTCLRTLKYPGLGEVSFARCDAARGWV--RIQKHKIPIIREVPDAVENGPFN-YRVVYEGGVSVRTEPRF 330 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig110.1330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig110.1330.1 >prot_S-firma_F_contig110.1330.1 ID=prot_S-firma_F_contig110.1330.1|Name=mRNA_S-firma_F_contig110.1330.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=612bp MLRRLGLAKAPANGTTDGGKDAISVVSRPDPYVQTRFFKVVYPGRVAVRAback to top mRNA from alignment at S-firma_F_contig110:4331..12269- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig110.1330.1 ID=mRNA_S-firma_F_contig110.1330.1|Name=mRNA_S-firma_F_contig110.1330.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=7939bp|location=Sequence derived from alignment at S-firma_F_contig110:4331..12269- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig110:4331..12269- >mRNA_S-firma_F_contig110.1330.1 ID=mRNA_S-firma_F_contig110.1330.1|Name=mRNA_S-firma_F_contig110.1330.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3672bp|location=Sequence derived from alignment at S-firma_F_contig110:4331..12269- (Sphaerotrichia firma ET2_F female)back to top |