mRNA_S-firma_F_contig10991.1306.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig10991.1306.1
Unique Name	mRNA_S-firma_F_contig10991.1306.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: F0YDP7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDP7_AURAN)

HSP 1 Score: 110 bits (274), Expect = 9.420e-30
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1

Query:    1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D+D  GT+ F EFV V  T+CMYS++DIL FCF  +D+D S  +DE EF+ L   V +G PMFPGNF T L+ FD+NDDG+IDF
Sbjct:    2 DLDGSGTIEFDEFVAVLLTYCMYSKDDILRFCFDTYDRDHSNSIDEQEFMALLSSVNNGTPMFPGNFTTVLQNFDSNDDGIIDF 85

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A8J2T1V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1V8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.920e-26
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 1

Query:    1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D+D  GT+ F EF+ V  T+CMY+++DIL FCF  FDKD+S  +DE+EF+ L   V +GAP+FPGN  TAL  FD+NDDG+IDF
Sbjct:  214 DLDGSGTIEFDEFIAVLLTYCMYTKDDILRFCFDTFDKDKSNSIDENEFMALLSTVNNGAPLFPGNMGTALMNFDSNDDGLIDF 297

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S3ZNR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.210e-25
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1

Query:    1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D+D +  L F E+V V  ++CMY+++DIL FCF +FD D  G +DE EF ++C  V++G P+F GNF+ ALE FDTNDDG+IDF
Sbjct:  177 DMDGNARLDFDEYVAVALSYCMYTKDDILKFCFDLFDLDSGGTIDEKEFTEMCVAVSAGDPLFSGNFRMALENFDTNDDGLIDF 260

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S1U8X3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8X3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.910e-21
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1

Query:    1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D+D  GT+ FSE+V V  T+CMYS+EDIL F F               F++LC+ + + APMFPGN+ TA++QFD NDDG+IDF
Sbjct:  138 DLDGSGTIEFSEYVRVLVTYCMYSKEDILRFAFDCXXXXXXXXXXXXXFMELCQGINNAAPMFPGNYSTAMKQFDVNDDGLIDF 221

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S2S8V8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S8V8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.060e-20
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1

Query:    1 DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLC-ECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D D +GT++F E + V  T+C++SQED+L+F F   D+D +G LDE EF+ +C E  A G  +FPGN   A  QFDTNDDG+IDF
Sbjct:  164 DTDQNGTINFDEMMQVLTTYCIFSQEDVLNFVFAYHDRDGTGSLDEKEFINMCVEVNAEG--LFPGNLNRAFRQFDTNDDGMIDF 246

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A7S1GD06_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD06_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.920e-19
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1

Query:   19 TLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDFG 255
            T++F EF+ +   +  Y ++DILD+CF+ FD+D SG +DEDEF+K+   + S  P+FPGN + A+E+FD +DDG + +G
Sbjct:  187 TMTFDEFILILCRYNCYRKDDILDYCFKTFDRDNSGNIDEDEFMKMAMWLQSKQPIFPGNIQRAMEEFDVDDDGQLGYG 265

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A836CE87_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE87_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.260e-18
Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 1

Query:    7 DDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVASGAPMFPGNFKTALEQFDTNDDGVIDF 252
            D  G L FS ++ +  T+C++++  IL FCF  +D + +G ++E  F++L + V + +P+FPGNF+ ALE+FD N DG+IDF
Sbjct:   39 DPHGALDFSAWLVLVLTYCLFTRAQILQFCFSQYDSNNTGCINEFRFMELLDTVNNASPVFPGNFQLALEEFDQNKDGLIDF 120

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A6G0WXQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXQ6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.870e-17
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1

Query:   22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVID 249
            L   +FV +  +F + SQ D++ FCF+ FD+D+SG L +DEF+ +CE +   G   F GNFK A+E FDTN DG++D
Sbjct:  113 LDIDDFVRIICSFVLLSQTDVIRFCFETFDEDDSGSLSKDEFIHMCESIQIRGEGFFKGNFKKAMEAFDTNHDGLLD 189

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: A0A397EMG9_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EMG9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.710e-16
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1

Query:   22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVIDF 252
            L   +FV +  TF + SQ DI  FCF+ FD+D+SG L +DEF+ +C+ +   G   F GNFK A+E FD N DG++DF
Sbjct:  144 LDIDDFVRIVCTFALMSQTDIYRFCFETFDEDDSGSLSKDEFVVMCDSIQIKGDGFFQGNFKKAMEAFDANHDGLLDF 221

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BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Match: W4H021_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H021_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.510e-16
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1

Query:   22 LSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFLKLCECVA-SGAPMFPGNFKTALEQFDTNDDGVIDF 252
            L   +FV +  TF + SQ DI  FCF  FD+D+SG L +DEF+ +C+ +   G   F GNFK A+E FD N DG++DF
Sbjct:  238 LDIDDFVRIVCTFALMSQTDIYRFCFDTFDEDDSGSLSKDEFVVMCDSIQIKGDGFFQGNFKKAMEAFDANHDGLLDF 315

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10991.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
F0YDP7_AURAN	9.420e-30	57.14	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
A0A8J2T1V8_9STRA	3.920e-26	57.14	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S3ZNR4_9STRA	3.210e-25	53.57	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S1U8X3_9STRA	3.910e-21	50.00	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2S8V8_9STRA	1.060e-20	51.76	Hypothetical protein n=1 Tax=labyrinthulid quahog ...	[more]
A0A7S1GD06_9STRA	3.920e-19	45.57	Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20...	[more]
A0A836CE87_9STRA	4.260e-18	42.68	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A6G0WXQ6_9STRA	8.870e-17	46.75	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A397EMG9_9STRA	1.710e-16	47.44	Uncharacterized protein n=8 Tax=Aphanomyces astaci...	[more]
W4H021_9STRA	4.510e-16	47.44	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10991	contig	S-firma_F_contig10991:1501..1814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	112098.XP_008606902.1
PFAMs	EF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8,Pkinase
Max annot lvl	2759\|Eukaryota
Evalue	1.45e-19
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
Description	protein serine/threonine kinase activity
COG category	T
Hectar predicted targeting category	other localisation
Exons	2
Model size	261
Cds size	261
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815643.7159684-CDS-S-firma_F_contig10991:1500..1638	1622815643.7159684-CDS-S-firma_F_contig10991:1500..1638	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10991 1501..1638 +
1696949474.4692996-CDS-S-firma_F_contig10991:1500..1638	1696949474.4692996-CDS-S-firma_F_contig10991:1500..1638	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10991 1501..1638 +
1622815643.7292404-CDS-S-firma_F_contig10991:1691..1814	1622815643.7292404-CDS-S-firma_F_contig10991:1691..1814	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10991 1692..1814 +
1696949474.4869633-CDS-S-firma_F_contig10991:1691..1814	1696949474.4869633-CDS-S-firma_F_contig10991:1691..1814	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10991 1692..1814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10991.1306.1	prot_S-firma_F_contig10991.1306.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig10991 1501..1814 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig10991:1501..1814+
coding sequence from alignment at S-firma_F_contig10991:1501..1814+

protein sequence of mRNA_S-firma_F_contig10991.1306.1

>prot_S-firma_F_contig10991.1306.1 ID=prot_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=87bp
DVDDDGTLSFSEFVNVCATFCMYSQEDILDFCFQIFDKDESGYLDEDEFL
KLCECVASGAPMFPGNFKTALEQFDTNDDGVIDFGV*

mRNA from alignment at S-firma_F_contig10991:1501..1814+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig10991.1306.1 ID=mRNA_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=314bp|location=Sequence derived from alignment at S-firma_F_contig10991:1501..1814+ (Sphaerotrichia firma ET2_F female)
GACGTGGATGACGACGGCACACTGAGCTTCAGCGAGTTTGTGAATGTGTG
CGCCACGTTTTGCATGTACAGCCAGGAGGACATTTTGGACTTTTGCTTTC
AGATTTTTGACAAGGACGAGAGTGGCTACTTGGACGAGGTCCGACAGATC
GCGGCCATCTCCACACCCCACCCACCTAACCTCCCTCTCAGGACGAGTTC
CTCAAGCTGTGCGAATGTGTGGCGTCCGGGGCGCCCATGTTCCCCGGCAA
CTTCAAGACGGCGCTGGAGCAGTTTGATACCAACGACGACGGCGTGATTG
ATTTTGGTGTGTGA

Coding sequence (CDS) from alignment at S-firma_F_contig10991:1501..1814+

>mRNA_S-firma_F_contig10991.1306.1 ID=mRNA_S-firma_F_contig10991.1306.1|Name=mRNA_S-firma_F_contig10991.1306.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=522bp|location=Sequence derived from alignment at S-firma_F_contig10991:1501..1814+ (Sphaerotrichia firma ET2_F female)
GACGTGGATGACGACGGCACACTGAGCTTCAGCGAGTTTGTGAATGTGTG
CGCCACGTTTTGCATGTACAGCCAGGAGGACATTTTGGACTTTTGCTTTC
AGATTTTTGACAAGGACGAGAGTGGCTACTTGGACGAGGACGTGGATGAC
GACGGCACACTGAGCTTCAGCGAGTTTGTGAATGTGTGCGCCACGTTTTG
CATGTACAGCCAGGAGGACATTTTGGACTTTTGCTTTCAGATTTTTGACA
AGGACGAGAGTGGCTACTTGGACGAGGACGAGTTCCTCAAGCTGTGCGAA
TGTGTGGCGTCCGGGGCGCCCATGTTCCCCGGCAACTTCAAGACGGCGCT
GGAGCAGTTTGATACCAACGACGACGGCGTGATTGATTTTGGTGTGTGAG
ACGAGTTCCTCAAGCTGTGCGAATGTGTGGCGTCCGGGGCGCCCATGTTC
CCCGGCAACTTCAAGACGGCGCTGGAGCAGTTTGATACCAACGACGACGG
CGTGATTGATTTTGGTGTGTGA