mRNA_S-firma_F_contig10937.1243.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A024TUS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUS5_9STRA) HSP 1 Score: 158 bits (399), Expect = 5.490e-44 Identity = 87/180 (48.33%), Postives = 131/180 (72.78%), Query Frame = 1
Query: 10 NSFTPPCQFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
SF + +++G + CVDSFL++FT++P R L L V++ F + +F R+ V+D+L +++ S+ VL V++SRVYH IRG+A+IKLYV+F +LEI DKL SSLGQD+L A+Y T+R PR + +++ + + +YVVLHSLLLF Q+V++NVAI S S++L+ LL+SNNF E+K
Sbjct: 117 KSFVEMEKLVIYGLVLCVDSFLYVFTYLPLRILLALGSGVVSVFCTR-IFRRSHVHDVLTAVIMVLSTAVLMQVDMSRVYHLIRGQALIKLYVLFTMLEIFDKLFSSLGQDVLDAMYFTVRYQPRRV-GRMMFDFAVCSIYVVLHSLLLFGQVVTINVAIHSSSSSLMTLLISNNFAELK 294
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A0P1B5A8_PLAHL (Predicted membrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5A8_PLAHL) HSP 1 Score: 160 bits (404), Expect = 4.160e-43 Identity = 90/186 (48.39%), Postives = 131/186 (70.43%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N F P Q LFG L +DSFL++FT++P R V + F + VF R YD++ +I ++VL+YV++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T++ HPR +T +L ++ + + YVVLH+LLLF Q+V+LNVA++S +++LL LL+SNNF E+K
Sbjct: 176 RVQNFFVVPLNTEQLFLFGVLLALDSFLYVFTYLPLRMFFACGCAVTSGFHAQ-VFRRTHFYDLMVAVIIGVGTMVLTYVDMSRVYHAIRGQAMIKLYVLFTMIEIFDRLFSSLGQDILDSLYYTVKYHPRRIT-RLFLDFTVAITYVVLHALLLFAQVVTLNVAVNSSNSSLLTLLISNNFAELK 359
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: D0NR04_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NR04_PHYIT) HSP 1 Score: 159 bits (402), Expect = 5.690e-43 Identity = 90/186 (48.39%), Postives = 129/186 (69.35%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N F P Q LFG L +DSFL++FT++P R L V ++F + VF R YD++ +I + VL YV++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T + HPR +T ++ ++ + + YVVLH+LLLF Q+V+LNVA++S + +LL LL+SNNF E+K
Sbjct: 151 RVQNFFVVPLNTEQLFLFGVLLALDSFLYVFTYLPLRILFACGCAVTSSFHAR-VFRRTHFYDLMVAVIIAVGTTVLGYVDMSRVYHAIRGQAMIKLYVLFTMIEIFDRLFSSLGQDVLDSLYYTAKYHPRRVT-RMFLDFAVAITYVVLHALLLFAQVVTLNVAVNSSNTSLLTLLISNNFAELK 334
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A024TSW1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSW1_9STRA) HSP 1 Score: 158 bits (399), Expect = 8.340e-43 Identity = 87/180 (48.33%), Postives = 131/180 (72.78%), Query Frame = 1
Query: 10 NSFTPPCQFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
SF + +++G + CVDSFL++FT++P R L L V++ F + +F R+ V+D+L +++ S+ VL V++SRVYH IRG+A+IKLYV+F +LEI DKL SSLGQD+L A+Y T+R PR + +++ + + +YVVLHSLLLF Q+V++NVAI S S++L+ LL+SNNF E+K
Sbjct: 117 KSFVEMEKLVIYGLVLCVDSFLYVFTYLPLRILLALGSGVVSVFCTR-IFRRSHVHDVLTAVIMVLSTAVLMQVDMSRVYHLIRGQALIKLYVLFTMLEIFDKLFSSLGQDVLDAMYFTVRYQPRRV-GRMMFDFAVCSIYVVLHSLLLFGQVVTINVAIHSSSSSLMTLLISNNFAELK 294
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A225W063_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W063_9STRA) HSP 1 Score: 159 bits (403), Expect = 8.710e-43 Identity = 90/186 (48.39%), Postives = 131/186 (70.43%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N F P Q LFG L +DSFL++FT++P R L V ++F + VF R YD++ +I ++VL +V++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T + HPR +T ++ ++ + ++YVVLHSLLLF Q+V+LNVA++S + +LL LL+SNNF E+K
Sbjct: 192 RVQNFFVVPLNTEQLFLFGVLLALDSFLYVFTYLPLRILFACGCAVTSSFHTR-VFRRTHFYDLMVAVIISVGTMVLGHVDMSRVYHAIRGQAMIKLYVLFTMIEIFDRLFSSLGQDVLDSLYYTAKYHPRRVT-RMFLDFAVAIIYVVLHSLLLFAQVVTLNVAVNSSNTSLLTLLISNNFAELK 375
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A662WLZ5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLZ5_9STRA) HSP 1 Score: 155 bits (393), Expect = 5.560e-42 Identity = 88/186 (47.31%), Postives = 130/186 (69.89%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N F P Q LFG L +DSFL++FT++P R L V ++F + VF R YD++ ++ +VVL +V++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T + PR +T ++ ++ + ++YVVLH+LLLF Q+V+LNVA++S + +LL LL+SNNF E+K
Sbjct: 104 RVQNFFAVPRNTEQLFLFGVLLALDSFLYVFTYLPLRILFACGCAVTSSFHTR-VFRRTHFYDLMVAVIVAVGTVVLGHVDMSRVYHSIRGQAMIKLYVLFTMIEIFDRLFSSLGQDVLDSLYYTAKYQPRRVT-RMFLDFAVAIIYVVLHALLLFAQVVTLNVAVNSSNTSLLTLLISNNFAELK 287
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: W4GDR1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDR1_9STRA) HSP 1 Score: 155 bits (392), Expect = 6.820e-42 Identity = 85/180 (47.22%), Postives = 130/180 (72.22%), Query Frame = 1
Query: 10 NSFTPPCQFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
SF + +++G + CVDSFL++FT++P R + L V++ F + +F R+ V+D+L +++ S+ VL V++SRVYH IR +A+IKLYV+F +LEI DKL SSLGQD+L A+Y T+R PR + +++ + + +YVVLHSLLLF Q+V++NVAI S S++L+ LL+SNNF E+K
Sbjct: 94 KSFVEMEKLVIYGLVLCVDSFLYVFTYLPLRIILALGSAVVSVFYTR-IFRRSHVHDLLTAVIVILSTGVLMQVDMSRVYHLIRNQALIKLYVLFTMLEIFDKLFSSLGQDVLDAMYFTVRYQPRRV-GRMMFDFAVCSIYVVLHSLLLFGQVVTINVAIHSSSSSLMTLLISNNFAELK 271
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: G4ZK70_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZK70_PHYSP) HSP 1 Score: 153 bits (386), Expect = 1.230e-40 Identity = 88/186 (47.31%), Postives = 127/186 (68.28%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N F P Q FG L +DSFL++FT++P R L V ++F + V R YD++ ++ + VL V++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T + HPR +T ++ ++ + +VYVVLHSLLLF Q+V+LNVA++S + +LL LL+SNNF E+K
Sbjct: 155 RVQNFFVVPVNTEQLFFFGVLLALDSFLYVFTYLPLRILFACGCAVTSSFHTR-VLRRTHFYDLMVAVIVAVGTSVLLNVDMSRVYHAIRGQAMIKLYVLFTMIEIFDRLFSSLGQDILDSLYYTAKYHPRRVT-RMFLDFTVAIVYVVLHSLLLFAQVVTLNVAVNSSNTSLLTLLISNNFAELK 338
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: H3HCB3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3HCB3_PHYRM) HSP 1 Score: 148 bits (374), Expect = 3.870e-40 Identity = 83/170 (48.82%), Postives = 121/170 (71.18%), Query Frame = 1
Query: 40 LFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
LFG L +DSFL+ FT++P R L V + F + VF R YD++ ++ + VL YV++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T + PR +T ++ ++ + ++YVVLHSLLLF Q+V+LNVA++S + +LL LL+SNNF E+K
Sbjct: 4 LFGVLLALDSFLYAFTYLPLRILFACGCAVTSGFHTR-VFRRTHFYDLMVAVIMAVGTTVLWYVDMSRVYHAIRGQAMIKLYVLFTMIEIFDRLFSSLGQDVLDSLYYTAKYQPRRVT-RMFLDFAVAIIYVVLHSLLLFTQVVTLNVAVNSSNTSLLTLLISNNFAELK 171
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Match: A0A8K1FD37_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD37_PYTOL) HSP 1 Score: 147 bits (370), Expect = 2.730e-38 Identity = 87/186 (46.77%), Postives = 126/186 (67.74%), Query Frame = 1
Query: 1 RVSNSFTPPC---QFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKHVFHRADVYDILRGFVILFSSVVLSYVELSRVYHYIRGEAIIKLYVIFNILEILDKLLSSLGQDLLSALYRTIRDHPRYLTAKLIINVLLTVVYVVLHSLLLFVQLVSLNVAIDSRSNALLPLLVSNNFVEVK 549
RV N P Q FG +DSFL++FT++P R L V ++F + VF R YD++ +I ++VL V++SRVYH IRG+A+IKLYV+F ++EI D+L SSLGQD+L +LY T R PR +T ++ ++ + +VYVVLH+LLLF Q+V++NVAI+S + +LL LL+SNNF E+K
Sbjct: 162 RVQNFLVVPYNTEQLFAFGVFLALDSFLYVFTYLPMRILFACGCAVTSSFHTQ-VFRRTHFYDLMVAVIISVGTIVLWQVDMSRVYHIIRGQAMIKLYVLFTMIEIFDRLFSSLGQDVLDSLYYTARFQPRRVT-RMTMDFGVAIVYVVLHALLLFAQVVTINVAINSSNTSLLTLLISNNFAELK 345 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10937.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10937.1243.1 >prot_S-firma_F_contig10937.1243.1 ID=prot_S-firma_F_contig10937.1243.1|Name=mRNA_S-firma_F_contig10937.1243.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=183bp RVSNSFTPPCQFLLFGYLACVDSFLHIFTFVPFRALKGLYHVVMNAFTLKback to top mRNA from alignment at S-firma_F_contig10937:4186..4859+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10937.1243.1 ID=mRNA_S-firma_F_contig10937.1243.1|Name=mRNA_S-firma_F_contig10937.1243.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=674bp|location=Sequence derived from alignment at S-firma_F_contig10937:4186..4859+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10937:4186..4859+ >mRNA_S-firma_F_contig10937.1243.1 ID=mRNA_S-firma_F_contig10937.1243.1|Name=mRNA_S-firma_F_contig10937.1243.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1098bp|location=Sequence derived from alignment at S-firma_F_contig10937:4186..4859+ (Sphaerotrichia firma ET2_F female)back to top |