mRNA_S-firma_F_contig10816.1092.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10816.1092.1
Unique NamemRNA_S-firma_F_contig10816.1092.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A4P9ZUX7_9FUNG (Ribonuclease Z n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZUX7_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 8.960e-22
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAALVV------CLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            ++Y+CT P VPG+F    A+ALGVP GRL GQL +   + L DGTV++P+Q   P  PG V  V  CP++A++D ++  P +  +   D+  V       CL+H    GV+ D +YQA+M RF     H+
Sbjct:  219 LTYICTGPSVPGKFDVKAAEALGVPKGRLRGQLVRGETIVLPDGTVISPDQCVHPGRPGAVFIVCDCPSVAYIDSLIKQPGFKPYYRDDSTHVTSDRSVDCLIHNTGPGVLQDPRYQAWMHRFGAETHHL 348          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A7S0BHQ7_9RHOD (Ribonuclease Z (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHQ7_9RHOD)

HSP 1 Score: 98.6 bits (244), Expect = 1.410e-21
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWA-KFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            + Y+C +  +PG+F P KA ALG+P G LFG+L+K   VTL DG V+ P QV  P TPG +V +V CP ++++  +++    + K++       +C++H     V+ D +Y ++MA F     HI
Sbjct:  166 ICYVCKIKDIPGKFDPQKASALGIPRGPLFGKLTKGEEVTLPDGRVIAPGQVILPPTPGPIVMIVCCPDVSYIASLISESGLSSKYLNPSMERNLCIIHFSTLSVLSDQRYSSWMASFGGNATHI 290          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A059LHW6_9CHLO (Ribonuclease Z (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHW6_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 2.860e-21
Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    4 SYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIG--ADAALVVCLVHLGPRGVVLDGKYQAFMARF 351
            +Y+C +  VPGRF P KA +LGVP G+ +GQL +   VT  +G  VTP +V +P TPG VV V+ CP++A+   + A P   + +G  A AA + C+VHL P+ VV D +Y ++ + F
Sbjct:  232 AYLCRLADVPGRFLPQKAASLGVPRGKAYGQLVRGESVTAANGQTVTPAEVCEPSTPGPVVLVMDCPSMAYFQSLRAQPDLERCLGDPAWAARLACVVHLAPKEVVEDERYASWASGF 349          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A8H7PSE7_9FUNG (Ribonuclease Z n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PSE7_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 4.250e-21
Identity = 49/125 (39.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGA-DAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            +SY+C  P V G+F+   A ALG+ PG ++G+L +   +TLDDGTVVTP++V DP  PG V  V  CP+  ++  + +   ++++ GA + + +  +VH+  +GV+ + +YQ +M  FP  VQHI
Sbjct:  336 ISYICRGPEVKGKFNKAAAVALGIKPGPMYGKLHRGESITLDDGTVVTPDRVCDPSIPGHVFIVADCPSPEYIQSLTSSSLFSEYQGASNGSRLSVIVHMLGKGVLENQQYQEWMNTFPSTVQHI 460          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A507DNV9_9FUNG (Ribonuclease Z n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DNV9_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 7.930e-21
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAK-FIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHIFVRR 384
            + Y+   P + G+FHP KAK LG  PG  FG L   +PVTLDDGTV+ P+QV D D PG +  ++ CP   +++ +  + A+   F G     V  ++H+    V+   +Y+ +M  FP+  QH+ + R
Sbjct:  305 ICYIAQGPTMKGKFHPQKAKGLGAQPGNQFGMLYNRIPVTLDDGTVIYPDQVNDADVPGSIFIIIECPNALYIESLTKNSAFEPHFRGNTQNEVKVIIHILGDDVLDHVQYRNWMNEFPEDTQHLIISR 433          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A8H7BQ21_9FUNG (Ribonuclease Z n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ21_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 6.910e-20
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAA-LVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            +SY+C  P + G+F+   A ALG+ PG ++G+L K   VTL+DG V+TP+QV  P  PG +  +V CP +++VD +++ P++ K+   D       +VHL    V+ D +Y+ +M RF    +HI
Sbjct:  274 ISYICRGPTLLGKFNKQAALALGINPGPIYGKLHKGETVTLEDGRVITPDQVSSPPVPGYLFLIVDCPDISYVDNLISSPSFEKYQTIDETDSPSVIVHLVGDDVLQDARYRQWMNRFNPKTEHI 398          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A1Y2DWP0_9FUNG (Ribonuclease Z n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2DWP0_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 3.280e-19
Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVV---------AHPAWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            Y+C   IVPG+F+P KAKALGV PG+ FG LS+   VT  DGTVV PEQVK+PD    +  VV CP+L H+  ++          HP     I            LG   ++ D  YQ++M +FP+   HI
Sbjct:  285 YICQGHIVPGKFNPQKAKALGVIPGKQFGLLSRGECVTTSDGTVVRPEQVKEPDKISSIFIVVDCPSLDHIPSLIQQDCFRDPKVHPYTRNIIHI----------LGDPLILKDPSYQSWMKQFPENCNHI 405          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A0D2N138_9CHLO (Ribonuclease Z n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N138_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 4.490e-19
Identity = 54/142 (38.03%), Postives = 69/142 (48.59%), Query Frame = 1
Query:    7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHP--------------------AWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            Y+C +  VPG+F P KAKALGVPPG L+GQL ++ PVT   G  V P  V  P  PG ++ +V CPT AH+  V   P                    A A          + ++HL P  V     YQAFMARF    +H+
Sbjct:  263 YLCELADVPGKFDPVKAKALGVPPGPLYGQLQRDTPVTTPAGVTVQPSDVMSPAVPGPLLLIVDCPTAAHLAAVEGAPQVQRLQXXXXXXXXXXXXXXATAAGAQQQPGRELFVIHLTPADVSESAAYQAFMARFGPACRHV 404          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A2P6VBD5_9CHLO (Ribonuclease Z n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBD5_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 3.870e-18
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFI-GADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHIFV 378
            Y+C +P VPG+F P KA ALGVP G L+G+L K   VT  +G VV P  V +P TPG VV VV CP+ A +  + A P       G+    V  +VHL P  V     Y+A++A F    +H+ V
Sbjct:  229 YICELPDVPGKFMPQKAAALGVPRGPLYGKLVKGEEVTAANGQVVRPADVMEPATPGPVVLVVDCPSAAFLPALAAAPQLKDCSSGSKRDKVAVVVHLSPLEVTRLPAYRAWLACFAPEAKHLLV 353          
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A1X2GSV3_9FUNG (Ribonuclease Z n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSV3_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 7.210e-18
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
            +SY+C +P   G F P +A  LGV PG LFGQL +   VTL+DGTVVT +QV  PD PG +  V+ CP  +++D +V+  A+  +   +   V+  VHL    V+ +  Y+ +M  F     HI
Sbjct:  252 ISYICRLPTRRGTFLPKEAIKLGVKPGPLFGQLQRGGSVTLEDGTVVTHDQVCQPDIPGPLFMVIDCPDPSYIDELVSATAFQPYYNDENVKVI--VHLTSDEVLAEPSYRQWMNNFHQNTDHI 373          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9ZUX7_9FUNG8.960e-2240.00Ribonuclease Z n=1 Tax=Dimargaris cristalligena Ta... [more]
A0A7S0BHQ7_9RHOD1.410e-2136.80Ribonuclease Z (Fragment) n=1 Tax=Rhodosorus marin... [more]
A0A059LHW6_9CHLO2.860e-2143.22Ribonuclease Z (Fragment) n=1 Tax=Helicosporidium ... [more]
A0A8H7PSE7_9FUNG4.250e-2139.20Ribonuclease Z n=1 Tax=Umbelopsis vinacea TaxID=44... [more]
A0A507DNV9_9FUNG7.930e-2136.43Ribonuclease Z n=2 Tax=Synchytrium endobioticum Ta... [more]
A0A8H7BQ21_9FUNG6.910e-2037.60Ribonuclease Z n=1 Tax=Apophysomyces ossiformis Ta... [more]
A0A1Y2DWP0_9FUNG3.280e-1941.22Ribonuclease Z n=1 Tax=Neocallimastix californiae ... [more]
A0A0D2N138_9CHLO4.490e-1938.03Ribonuclease Z n=1 Tax=Monoraphidium neglectum Tax... [more]
A0A2P6VBD5_9CHLO3.870e-1842.40Ribonuclease Z n=1 Tax=Micractinium conductrix Tax... [more]
A0A1X2GSV3_9FUNG7.210e-1839.52Ribonuclease Z n=1 Tax=Hesseltinella vesiculosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10816contigS-firma_F_contig10816:3614..4009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog3075.A0A087SI88
PFAMsLactamase_B_2,Lactamase_B_4
Max annot lvl3041|Chlorophyta
KEGG koko:K00784
KEGG Pathwayko03013,map03013
Evalue3.27e-22
EggNOG OGsCOG1234@1|root,KOG2121@2759|Eukaryota,37MW3@33090|Viridiplantae,34HFS@3041|Chlorophyta
EC3.1.26.11
DescriptionBeta-lactamase superfamily domain
COG categoryS
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.5367749-CDS-S-firma_F_contig10816:3613..40001622815624.5367749-CDS-S-firma_F_contig10816:3613..4000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10816 3614..4000 -
1696949461.8291335-CDS-S-firma_F_contig10816:3613..40001696949461.8291335-CDS-S-firma_F_contig10816:3613..4000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10816 3614..4000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.5464272-UTR-S-firma_F_contig10816:4000..40091622815624.5464272-UTR-S-firma_F_contig10816:4000..4009Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10816 4001..4009 -
1696949461.8433712-UTR-S-firma_F_contig10816:4000..40091696949461.8433712-UTR-S-firma_F_contig10816:4000..4009Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10816 4001..4009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10816.1092.1prot_S-firma_F_contig10816.1092.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10816 3614..4000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10816.1092.1

>prot_S-firma_F_contig10816.1092.1 ID=prot_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=129bp
MCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVK
DPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAALVVCLVHLGPRG
VVLDGKYQAFMARFPDGVQHIFVRRCVL*
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mRNA from alignment at S-firma_F_contig10816:3614..4009-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10816.1092.1 ID=mRNA_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=396bp|location=Sequence derived from alignment at S-firma_F_contig10816:3614..4009- (Sphaerotrichia firma ET2_F female)
GTGTCGTACATGTGCACGGTGCCCATCGTCCCCGGGCGGTTCCACCCTGA CAAAGCCAAAGCCCTGGGGGTGCCACCCGGGCGCTTGTTTGGCCAGCTGT CGAAAAACATGCCTGTCACGCTTGACGATGGCACGGTGGTGACGCCAGAG CAAGTGAAGGACCCGGATACGCCAGGGCAAGTGGTTGGCGTCGTGGCGTG CCCGACGTTGGCACACGTGGACGGCGTGGTGGCCCACCCCGCGTGGGCCA AATTTATTGGGGCAGACGCCGCCCTGGTCGTGTGCTTGGTCCACCTGGGG CCCCGTGGTGTGGTCTTGGACGGCAAGTACCAGGCGTTCATGGCTCGCTT CCCGGACGGCGTGCAGCACATTTTTGTAAGGCGCTGCGTGTTGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10816:3614..4009-

>mRNA_S-firma_F_contig10816.1092.1 ID=mRNA_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=774bp|location=Sequence derived from alignment at S-firma_F_contig10816:3614..4009- (Sphaerotrichia firma ET2_F female)
ATGTGCACGGTGCCCATCGTCCCCGGGCGGTTCCACCCTGACAAAGCCAA
AGCCCTGGGGGTGCCACCCGGGCGCTTGTTTGGCCAGCTGTCGAAAAACA
TGCCTGTCACGCTTGACGATGGCACGGTGGTGACGCCAGAGCAAGTGAAG
GACCCGGATACGCCAGGGCAAGTGGTTGGCGTCGTGGCGTGCCCGACGTT
GGCACACGTGGACGGCGTGGTGGCCCACCCCGCGTGGGCCAAATTTATTG
GGGCAGACGCCGCCCTGGTCGTGTGCTTGGTCCACCTGGGGCCCCGTGGT
GTGGTCTTGGACGGCAAGTACCAGGCGTTCATGGCTCGCTTCCCGGACGG
CGTGCAGCACATTTTTGTAAGGCGCTGCGTGTTGTAGATGTGCACGGTGC
CCATCGTCCCCGGGCGGTTCCACCCTGACAAAGCCAAAGCCCTGGGGGTG
CCACCCGGGCGCTTGTTTGGCCAGCTGTCGAAAAACATGCCTGTCACGCT
TGACGATGGCACGGTGGTGACGCCAGAGCAAGTGAAGGACCCGGATACGC
CAGGGCAAGTGGTTGGCGTCGTGGCGTGCCCGACGTTGGCACACGTGGAC
GGCGTGGTGGCCCACCCCGCGTGGGCCAAATTTATTGGGGCAGACGCCGC
CCTGGTCGTGTGCTTGGTCCACCTGGGGCCCCGTGGTGTGGTCTTGGACG
GCAAGTACCAGGCGTTCATGGCTCGCTTCCCGGACGGCGTGCAGCACATT
TTTGTAAGGCGCTGCGTGTTGTAG
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