mRNA_S-firma_F_contig10040.108.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10040.108.1
Unique NamemRNA_S-firma_F_contig10040.108.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10040.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10040contigS-firma_F_contig10040:2159..4165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog159749.K0R0F1
PFAMsVWA_2
Max annot lvl2836|Bacillariophyta
Evalue5.02e-05
EggNOG OGsKOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta
Descriptionvon Willebrand factor type A domain
COG categoryPT
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.8372583-CDS-S-firma_F_contig10040:2158..22471622815528.8372583-CDS-S-firma_F_contig10040:2158..2247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10040 2159..2247 +
1696949391.40946-CDS-S-firma_F_contig10040:2158..22471696949391.40946-CDS-S-firma_F_contig10040:2158..2247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10040 2159..2247 +
1622815528.8486862-CDS-S-firma_F_contig10040:4085..41641622815528.8486862-CDS-S-firma_F_contig10040:4085..4164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10040 4086..4164 +
1696949391.4239902-CDS-S-firma_F_contig10040:4085..41641696949391.4239902-CDS-S-firma_F_contig10040:4085..4164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10040 4086..4164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10040.108.1prot_S-firma_F_contig10040.108.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10040 2159..4164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10040.108.1

>prot_S-firma_F_contig10040.108.1 ID=prot_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=56bp
RVEHPDRPGERQGRCIGPQRRGSHSVREPLYVAASSGPKDVVIIVDISGS
MEKNDR
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mRNA from alignment at S-firma_F_contig10040:2159..4165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10040.108.1 ID=mRNA_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2007bp|location=Sequence derived from alignment at S-firma_F_contig10040:2159..4165+ (Sphaerotrichia firma ET2_F female)
CGGGTTGAACATCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGG
ACCTCAGCGCCGCGGCAGTCACAGCGTACGAGAGCCGTTGCGTTCTTACC
AAGGGCGAATGCGAGGGTCTTCACTACTCCGGCTGCAGGAGCCGCCTGCC
CAGGGGCGAGTGCACCAGCAACACCATGACAGTCGTCGACTGTCTCGAAG
CAGAGTGTGGTAGCGTGCAAGATTTCTCCAACCCAGTCTGTGAGTCGGTC
GACGCTGCTTTTTTCGGTAGAAGCGCCGGTGGTCTGACATACATGCCGTC
GGACGCAACGAAGACGATATATCTTTCTGACGTTTCCAGTGCCACATAGA
GGTTGTGCGTCCAGCCTCTTGTGAGAAGAAATAATTGTCTCTCCAGATAG
ATGCAGACACGCCGTTCACCACCCCGGCAACCCCCGGCCACAATGAGCGA
TGCTTTCCACACCAACAACCCGCACAGTTTGTGGGTTCTTGTTTGTTTAT
ATTGGGGCATGGTCATACGGAGTACATAATGAAATGCCTCGTTCTTGGCA
AGTCACGGTTCTCCTCCGTCCTCTGTTATGCTGTGATGCATACATCATCG
TTTTCGCAAGCAGCTTCAAAACAATATTCCGCGTTGTTGTCCAATACCTC
GCAGTCGCTGAGGACGTTCGGGAGTCGCTCGTGACTATATCGTGGACACC
TATGGATGGCCTACCATCGCCGTAGAATCACTTGAGAACGTCCCGGTCAG
AAACAGGGGAATTTTTCGCTTTTGCCTCCTCCGCGGGTGGTTTGGCGCTG
TCACCCCTCTATACCTTTGAGAACGTCCGGGGTTGGTGTTTGGACCACTT
TTGTTTACCACGGTACTTTCACCCCGCCGGGCGTTCTGAAGGAATATCAC
GGCACTCCCAAATACATTGCTCCGCATTTGCACCTAACCTGTTCGCCTTT
TTGTCGTCCTTGCACACGGTGCTAAACCGAACCCCCTAAACTGCTGTGCT
GCGCCGTGTCACTCTACTCACGAAATCACGCACCCGGATTATTGTTTACG
AAACGTCATCCGCGCAGTGCGCATCCCCGAAAGTATCCAGGGCGTCGACG
GCATTATCACCGACCTCGACGTGATCGAGACGGTCTGCTACGGTATCATC
CTGGACGGTCCTCTATCCGATGGGTACGAGGGCTCGCAGTCGCCCGACGC
CGTGTCTTCGGTCTTCACGTACTTCGGCTCCTGGAACGGCGTGATGAGGC
AGTACCCTGGAGCGAGCTACAGCAGCGAGTGCGGGAACTACGACCCTCGT
GTTCGCCCTTGGTCAGTTGTTGGCTATGATCTCCCTGTTTTGTTTCATAC
TGCCGAAGCGGAGGACTAACTTACAGCGTCGTGCAATGACCAACACCGTG
CCATGCCGATATGCTGCTATTATGCTGTTATCGTCCCGGCGACAATACTC
GCACAATGATAGTTCATGTGGCTGTTACGTACGTTAAGGCTCGGTACGTC
GGCCTTTTTTGTTGAGCTAGCAGACAACCTCCGTCTTCGACTAACTCGGC
CTTTGTGCAGCAACAGCGACTATCCTAAAGATTGCAGGCCTACTCAATGT
AGGGAGAACGCCCCCGTCCCTCCCAAACACATGGCGTACTCCACGATTGG
GGCTATCTCACGTTTGGCGATAGTGATCCACTTTTTAAGCTGTTGAGTGA
ATGCGGCAAGTGTTTCGATTAATAAGCAGGATGCGTTTCCACAAGAGCTT
ATTCGCTGTGGCCATACTCCTGCTCCTACGACACCCCATGAGTGTATGTG
TAACCAGGGTATGTGGCAAGGCGTTACATCCTCAGAAATCGTTCGTACCA
CAAAATAGTACACGGCTGACGAATAATGTAGAAAATTTATTAAAAATAAT
AAAACATGCTTATTCCATCTCCTGAAGGTATGTAGCAGCTTCGAGTGGCC
CGAAGGACGTCGTGATCATCGTGGACATCAGCGGTTCCATGGAGAAGAAT
GACAGGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10040:2159..4165+

>mRNA_S-firma_F_contig10040.108.1 ID=mRNA_S-firma_F_contig10040.108.1|Name=mRNA_S-firma_F_contig10040.108.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10040:2159..4165+ (Sphaerotrichia firma ET2_F female)
CGGGTTGAACATCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGG
ACCTCAGCGCCGCGGCAGTCACAGCGTACGAGAGCCGTTCGGGTTGAACA
TCCAGACCGTCCTGGAGAGCGCCAGGGGCGTTGCATTGGACCTCAGCGCC
GCGGCAGTCACAGCGTACGAGAGCCGTTGTATGTAGCAGCTTCGAGTGGC
CCGAAGGACGTCGTGATCATCGTGGACATCAGCGGTTCCATGGAGAAGAA
TGACAGGGTATGTAGCAGCTTCGAGTGGCCCGAAGGACGTCGTGATCATC
GTGGACATCAGCGGTTCCATGGAGAAGAATGACAGG
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