mRNA_S-firma_F_contig10774.1034.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10774.1034.1
Unique NamemRNA_S-firma_F_contig10774.1034.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10774.1034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10774contigS-firma_F_contig10774:2671..3608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size938
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10774.1034.1prot_S-firma_F_contig10774.1034.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10774 2894..3601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.7978926-UTR-S-firma_F_contig10774:2670..28931622815618.7978926-UTR-S-firma_F_contig10774:2670..2893Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10774 2671..2893 +
1696949457.8426013-UTR-S-firma_F_contig10774:2670..28931696949457.8426013-UTR-S-firma_F_contig10774:2670..2893Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10774 2671..2893 +
1622815618.822261-UTR-S-firma_F_contig10774:3601..36081622815618.822261-UTR-S-firma_F_contig10774:3601..3608Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10774 3602..3608 +
1696949457.8628144-UTR-S-firma_F_contig10774:3601..36081696949457.8628144-UTR-S-firma_F_contig10774:3601..3608Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10774 3602..3608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.8099322-CDS-S-firma_F_contig10774:2893..36011622815618.8099322-CDS-S-firma_F_contig10774:2893..3601Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10774 2894..3601 +
1696949457.8533742-CDS-S-firma_F_contig10774:2893..36011696949457.8533742-CDS-S-firma_F_contig10774:2893..3601Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10774 2894..3601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10774.1034.1

>prot_S-firma_F_contig10774.1034.1 ID=prot_S-firma_F_contig10774.1034.1|Name=mRNA_S-firma_F_contig10774.1034.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=236bp
MYQWQQCCVGMVGKVGAIVVASLGLPVPRRKRSRIGVECGGAMPCEVVKY
PTSRMTRFDTDISSVARGGGDECRISFTLLGEPWAWGSKRWSFSASLSRS
LINRLSIIILTKRGRPNPLAEGNKKNCCLSLWHARARVGGSERRRVRWEL
EYYHPYTLRKPRLGGLKPAHQPQLLARSFSASASSCAVETAVVRWLVGRM
DGWRKNMSPAAAVSGPTFDGPTTPTMVEKDNNRFH*
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mRNA from alignment at S-firma_F_contig10774:2671..3608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10774.1034.1 ID=mRNA_S-firma_F_contig10774.1034.1|Name=mRNA_S-firma_F_contig10774.1034.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=938bp|location=Sequence derived from alignment at S-firma_F_contig10774:2671..3608+ (Sphaerotrichia firma ET2_F female)
AACTTGTAGGCTACCTAGATGTGACCTTTTTTTTTTAGGGATGAACACTA
CACATTTCCGCTCTTCGACTTGGAGCGAGCGCTGACGCACCTCTGTGCGT
GGAGTGCGGCGGTCGCGTTGGCTGAGGGCAAAAGTGTGTGGTCGAGAGCG
GAGAAAGGGTTAAAAGAAAAGAAAAAAAGGGGGGCCACGGAAAGGAATCA
ACCTTGCAGGATTCAGCCGCCCGATGTACCAGTGGCAGCAGTGTTGCGTG
GGGATGGTAGGGAAGGTGGGTGCTATCGTGGTTGCTTCGTTGGGTCTTCC
AGTCCCTCGGAGGAAAAGAAGTAGGATAGGTGTTGAGTGTGGTGGCGCCA
TGCCATGTGAGGTGGTCAAGTATCCAACGAGTCGCATGACACGGTTCGAT
ACTGACATTAGTTCTGTTGCGCGGGGGGGGGGGGATGAATGTAGGATTAG
CTTTACGTTGTTAGGCGAGCCTTGGGCATGGGGGAGCAAGAGATGGTCGT
TTTCTGCCTCTCTCTCGCGGTCCTTAATAAACCGGCTCAGTATTATTATC
TTGACGAAGAGAGGACGACCGAATCCGCTTGCGGAAGGAAACAAGAAGAA
CTGCTGTTTGTCTCTTTGGCACGCGAGGGCAAGGGTTGGGGGATCGGAGA
GAAGGAGGGTGCGATGGGAACTCGAATACTACCACCCTTATACCTTACGA
AAACCGCGTCTCGGGGGTTTGAAACCTGCCCACCAACCACAGCTTCTTGC
TCGCTCGTTTTCGGCTTCGGCTTCGTCTTGTGCTGTTGAAACTGCTGTTG
TTCGGTGGTTGGTTGGACGGATGGATGGCTGGAGAAAAAACATGTCGCCA
GCAGCAGCAGTGAGTGGCCCAACTTTCGACGGCCCCACCACACCGACCAT
GGTTGAAAAAGACAACAACCGGTTTCATTGAATTCAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10774:2671..3608+

>mRNA_S-firma_F_contig10774.1034.1 ID=mRNA_S-firma_F_contig10774.1034.1|Name=mRNA_S-firma_F_contig10774.1034.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1416bp|location=Sequence derived from alignment at S-firma_F_contig10774:2671..3608+ (Sphaerotrichia firma ET2_F female)
ATGTACCAGTGGCAGCAGTGTTGCGTGGGGATGGTAGGGAAGGTGGGTGC
TATCGTGGTTGCTTCGTTGGGTCTTCCAGTCCCTCGGAGGAAAAGAAGTA
GGATAGGTGTTGAGTGTGGTGGCGCCATGCCATGTGAGGTGGTCAAGTAT
CCAACGAGTCGCATGACACGGTTCGATACTGACATTAGTTCTGTTGCGCG
GGGGGGGGGGGATGAATGTAGGATTAGCTTTACGTTGTTAGGCGAGCCTT
GGGCATGGGGGAGCAAGAGATGGTCGTTTTCTGCCTCTCTCTCGCGGTCC
TTAATAAACCGGCTCAGTATTATTATCTTGACGAAGAGAGGACGACCGAA
TCCGCTTGCGGAAGGAAACAAGAAGAACTGCTGTTTGTCTCTTTGGCACG
CGAGGGCAAGGGTTGGGGGATCGGAGAGAAGGAGGGTGCGATGGGAACTC
GAATACTACCACCCTTATACCTTACGAAAACCGCGTCTCGGGGGTTTGAA
ACCTGCCCACCAACCACAGCTTCTTGCTCGCTCGTTTTCGGCTTCGGCTT
CGTCTTGTGCTGTTGAAACTGCTGTTGTTCGGTGGTTGGTTGGACGGATG
GATGGCTGGAGAAAAAACATGTCGCCAGCAGCAGCAGTGAGTGGCCCAAC
TTTCGACGGCCCCACCACACCGACCATGGTTGAAAAAGACAACAACCGGT
TTCATTGAATGTACCAGTGGCAGCAGTGTTGCGTGGGGATGGTAGGGAAG
GTGGGTGCTATCGTGGTTGCTTCGTTGGGTCTTCCAGTCCCTCGGAGGAA
AAGAAGTAGGATAGGTGTTGAGTGTGGTGGCGCCATGCCATGTGAGGTGG
TCAAGTATCCAACGAGTCGCATGACACGGTTCGATACTGACATTAGTTCT
GTTGCGCGGGGGGGGGGGGATGAATGTAGGATTAGCTTTACGTTGTTAGG
CGAGCCTTGGGCATGGGGGAGCAAGAGATGGTCGTTTTCTGCCTCTCTCT
CGCGGTCCTTAATAAACCGGCTCAGTATTATTATCTTGACGAAGAGAGGA
CGACCGAATCCGCTTGCGGAAGGAAACAAGAAGAACTGCTGTTTGTCTCT
TTGGCACGCGAGGGCAAGGGTTGGGGGATCGGAGAGAAGGAGGGTGCGAT
GGGAACTCGAATACTACCACCCTTATACCTTACGAAAACCGCGTCTCGGG
GGTTTGAAACCTGCCCACCAACCACAGCTTCTTGCTCGCTCGTTTTCGGC
TTCGGCTTCGTCTTGTGCTGTTGAAACTGCTGTTGTTCGGTGGTTGGTTG
GACGGATGGATGGCTGGAGAAAAAACATGTCGCCAGCAGCAGCAGTGAGT
GGCCCAACTTTCGACGGCCCCACCACACCGACCATGGTTGAAAAAGACAA
CAACCGGTTTCATTGA
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