mRNA_S-firma_F_contig10758.1021.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10758.1021.1
Unique NamemRNA_S-firma_F_contig10758.1021.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10758.1021.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:    2 SDGNLQTRTNVFNAKRHRRVLGVDEGT*KAEAQRRLGEAEAAMV*SKVADDAAARALHAATIALRQ 199
            S  NL+TR NV N+ RHRRVLGVDEGT K EAQ ++ +A++A   +K   DAAAR+L+ A  ALR+
Sbjct:  694 SGRNLETRMNVVNSNRHRRVLGVDEGTQKEEAQAQVRQAQSARERAKSGADAAARSLNEARHALRE 759
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BLAST of mRNA_S-firma_F_contig10758.1021.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.950e-7
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:    2 SDGNLQTRTNVFNAKRHRRVLGVDEGT*KAEAQRRLGEAEAAMV*SKVADDAAARALHAATIALR 196
            SDGN+QTR N+ + +RH+ VLGVDEGT K E + ++ +  A +   +   DA AR   AA  A+R
Sbjct:  792 SDGNVQTRMNIVDTRRHKSVLGVDEGTQKQEIRAQIQQTNAVVEQLRAIADAEARTAKAAETAMR 856
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10758.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4M1_ECTSI1.920e-1056.06Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI8.950e-744.62Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10758contigS-firma_F_contig10758:1846..2574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size202
Cds size114
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10758.1021.1prot_S-firma_F_contig10758.1021.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10758 1932..2574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.581731-UTR-S-firma_F_contig10758:1845..19311622815617.581731-UTR-S-firma_F_contig10758:1845..1931Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10758 1846..1931 -
1696949457.001463-UTR-S-firma_F_contig10758:1845..19311696949457.001463-UTR-S-firma_F_contig10758:1845..1931Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10758 1846..1931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5986052-CDS-S-firma_F_contig10758:1931..19911622815617.5986052-CDS-S-firma_F_contig10758:1931..1991Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10758 1932..1991 -
1696949457.01048-CDS-S-firma_F_contig10758:1931..19911696949457.01048-CDS-S-firma_F_contig10758:1931..1991Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10758 1932..1991 -
1622815617.6148744-CDS-S-firma_F_contig10758:2520..25741622815617.6148744-CDS-S-firma_F_contig10758:2520..2574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10758 2521..2574 -
1696949457.0215893-CDS-S-firma_F_contig10758:2520..25741696949457.0215893-CDS-S-firma_F_contig10758:2520..2574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10758 2521..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10758.1021.1

>prot_S-firma_F_contig10758.1021.1 ID=prot_S-firma_F_contig10758.1021.1|Name=mRNA_S-firma_F_contig10758.1021.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=38bp
VRRQPADPHQRIQRQEAQACFGCGRRHLEGGGAEAVG*
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mRNA from alignment at S-firma_F_contig10758:1846..2574-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10758.1021.1 ID=mRNA_S-firma_F_contig10758.1021.1|Name=mRNA_S-firma_F_contig10758.1021.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_F_contig10758:1846..2574- (Sphaerotrichia firma ET2_F female)
GTCAGACGGCAACCTGCAGACCCGCACCAACGTATTCAACGCCAAGAGGC
ACAGGTAGGTAACCCAACCCGAGGCCAATCAAATCGAATCAAATCGGATC
GAGTCGAATCGAGTCGAATCGAATCGAATCGCTTTGTGCCTTTGGGGTTT
GGCGCTACCTATTGTGTTTGTGAGCTCGTCACGAACATGCCACGCCCCCG
AAGATAGGTTTGCTTGATGATTTCCTCCGTCCTGGTGCTGTTGAGTCTCG
TTGTCTTCCCGTCGTCGAGGGCCGTCATCCTTTGGTTGGTTTAATCCATC
ACACCTCGATCTCCGACACGTGCAGAGCTAAGATCGTACAGTGGCATACG
ACACCAAAATGCAGAGAACTGCCGTCGGTTCAGCGACGACGCAAGCTGTT
GCCGTCACGGTTGAAAGGACTAAGATCCATTCAATGAACCGACTTGTGGT
GTGGTAGGGCGTATCTTGGCATCTGCATTAGTGTCTACGTTCCCTAGACG
GGGGGACGTCGGGGACAGAGTTTCAACCCCTTTCATGAATGTGACGCCCT
CCTTGATTGGATCAATTCGACATGATGTTCCAGGCGTGTTTTGGGTGTGG
ACGAAGGCACCTAGAAGGCGGAGGCGCAGAGGCGGTTGGGTGAGGCAGAG
GCCGCGATGGTATGATCCAAGGTGGCTGACGATGCGGCAGCTAGGGCCCT
TCACGCAGCCACGATAGCGCTTCGGCAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10758:1846..2574-

>mRNA_S-firma_F_contig10758.1021.1 ID=mRNA_S-firma_F_contig10758.1021.1|Name=mRNA_S-firma_F_contig10758.1021.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=228bp|location=Sequence derived from alignment at S-firma_F_contig10758:1846..2574- (Sphaerotrichia firma ET2_F female)
GTCAGACGGCAACCTGCAGACCCGCACCAACGTATTCAACGCCAAGAGGC
ACAGGTCAGACGGCAACCTGCAGACCCGCACCAACGTATTCAACGCCAAG
AGGCACAGGCGTGTTTTGGGTGTGGACGAAGGCACCTAGAAGGCGGAGGC
GCAGAGGCGGTTGGGTGAGCGTGTTTTGGGTGTGGACGAAGGCACCTAGA
AGGCGGAGGCGCAGAGGCGGTTGGGTGA
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