prot_S-firma_F_contig10752.1017.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10752.1017.1
Unique Nameprot_S-firma_F_contig10752.1017.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length58
Homology
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BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Match: D8LTC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.540e-21
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0 
Query:    1 MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAKQDAS 54
            MAGGPAEMKVLGMLWKQAATG+AIG +AA  YYQ V+KQD +KI AYYAKQDA+
Sbjct:    1 MAGGPAEMKVLGMLWKQAATGIAIGASAAFVYYQAVTKQDAIKIDAYYAKQDAA 54
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BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Match: A0A6H5JP40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP40_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.850e-19
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 
Query:    1 MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAKQDAS 54
            MAGGPAEMKVLGMLWKQAATG+AIG +AA  YYQ V+KQD +KI  YY KQD +
Sbjct:    1 MAGGPAEMKVLGMLWKQAATGVAIGASAAFVYYQGVTKQDGIKIEGYYTKQDTA 54
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTC2_ECTSI3.540e-2179.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP40_9PHAE4.850e-1974.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..57
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10752contigS-firma_F_contig10752:3460..3633 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10752.1017.1mRNA_S-firma_F_contig10752.1017.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10752 3432..4337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10752.1017.1 ID=prot_S-firma_F_contig10752.1017.1|Name=mRNA_S-firma_F_contig10752.1017.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=58bp
MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAK
QDASKES*
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