mRNA_S-firma_F_contig1075.1014.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1075.1014.1
Unique NamemRNA_S-firma_F_contig1075.1014.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1075.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1075contigS-firma_F_contig1075:22135..22649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6615815-UTR-S-firma_F_contig1075:22134..222141622815616.6615815-UTR-S-firma_F_contig1075:22134..22214Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1075 22135..22214 +
1696949456.4251118-UTR-S-firma_F_contig1075:22134..222141696949456.4251118-UTR-S-firma_F_contig1075:22134..22214Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1075 22135..22214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6769092-CDS-S-firma_F_contig1075:22214..226491622815616.6769092-CDS-S-firma_F_contig1075:22214..22649Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1075 22215..22649 +
1696949456.4413598-CDS-S-firma_F_contig1075:22214..226491696949456.4413598-CDS-S-firma_F_contig1075:22214..22649Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1075 22215..22649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1075.1014.1prot_S-firma_F_contig1075.1014.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1075 22215..22649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1075.1014.1

>prot_S-firma_F_contig1075.1014.1 ID=prot_S-firma_F_contig1075.1014.1|Name=mRNA_S-firma_F_contig1075.1014.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
MCWMRSAPRSSRNSDEFLRLSPATMLFLLFVFRFRTTPSGFTFGCTTVVC
LKFSVCACSQKICTLQSAVPPGDTQVFVRTERLFSHGCRMACMPRRIADP
PPPAGGGPASRFLNCFSALSYEWLLANDQVIEGIVRLSATLRHSP
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mRNA from alignment at S-firma_F_contig1075:22135..22649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1075.1014.1 ID=mRNA_S-firma_F_contig1075.1014.1|Name=mRNA_S-firma_F_contig1075.1014.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=515bp|location=Sequence derived from alignment at S-firma_F_contig1075:22135..22649+ (Sphaerotrichia firma ET2_F female)
GATTCCGCGACTAAACCGTTGTATGTTTTGTGTGTGCTGTGTCTCAGTCG
GTCGTTGCCCCCCGCGGCTATCTAGAATTAATGTGCTGGATGCGGAGCGC
GCCACGCTCGAGCCGAAATTCAGACGAGTTCCTACGCTTGAGCCCGGCGA
CTATGTTGTTCTTGTTATTTGTCTTTCGTTTTCGGACCACGCCATCAGGA
TTTACCTTCGGCTGCACTACGGTCGTCTGTCTCAAGTTCTCCGTATGTGC
TTGCTCCCAAAAGATCTGCACGCTTCAATCGGCGGTGCCGCCGGGTGACA
CTCAAGTGTTTGTCCGCACAGAACGACTTTTCTCACATGGCTGCCGTATG
GCGTGCATGCCACGTCGCATCGCGGACCCCCCGCCTCCTGCGGGGGGAGG
CCCCGCCTCCCGCTTCCTGAATTGTTTTTCTGCCCTCTCTTATGAATGGC
TTCTTGCAAACGACCAGGTGATCGAGGGCATCGTGCGCCTCTCGGCTACC
CTGCGCCACTCCCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1075:22135..22649+

>mRNA_S-firma_F_contig1075.1014.1 ID=mRNA_S-firma_F_contig1075.1014.1|Name=mRNA_S-firma_F_contig1075.1014.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig1075:22135..22649+ (Sphaerotrichia firma ET2_F female)
ATGTGCTGGATGCGGAGCGCGCCACGCTCGAGCCGAAATTCAGACGAGTT
CCTACGCTTGAGCCCGGCGACTATGTTGTTCTTGTTATTTGTCTTTCGTT
TTCGGACCACGCCATCAGGATTTACCTTCGGCTGCACTACGGTCGTCTGT
CTCAAGTTCTCCGTATGTGCTTGCTCCCAAAAGATCTGCACGCTTCAATC
GGCGGTGCCGCCGGGTGACACTCAAGTGTTTGTCCGCACAGAACGACTTT
TCTCACATGGCTGCCGTATGGCGTGCATGCCACGTCGCATCGCGGACCCC
CCGCCTCCTGCGGGGGGAGGCCCCGCCTCCCGCTTCCTGAATTGTTTTTC
TGCCCTCTCTTATGAATGGCTTCTTGCAAACGACCAGGTGATCGAGGGCA
TCGTGCGCCTCTCGGCTACCCTGCGCCACTCCCCCATGTGCTGGATGCGG
AGCGCGCCACGCTCGAGCCGAAATTCAGACGAGTTCCTACGCTTGAGCCC
GGCGACTATGTTGTTCTTGTTATTTGTCTTTCGTTTTCGGACCACGCCAT
CAGGATTTACCTTCGGCTGCACTACGGTCGTCTGTCTCAAGTTCTCCGTA
TGTGCTTGCTCCCAAAAGATCTGCACGCTTCAATCGGCGGTGCCGCCGGG
TGACACTCAAGTGTTTGTCCGCACAGAACGACTTTTCTCACATGGCTGCC
GTATGGCGTGCATGCCACGTCGCATCGCGGACCCCCCGCCTCCTGCGGGG
GGAGGCCCCGCCTCCCGCTTCCTGAATTGTTTTTCTGCCCTCTCTTATGA
ATGGCTTCTTGCAAACGACCAGGTGATCGAGGGCATCGTGCGCCTCTCGG
CTACCCTGCGCCACTCCCCC
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