mRNA_S-firma_F_contig10714.966.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10714.966.1
Unique NamemRNA_S-firma_F_contig10714.966.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: L8HI54_ACACA (Exportin-T n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HI54_ACACA)

HSP 1 Score: 145 bits (367), Expect = 1.570e-35
Identity = 93/287 (32.40%), Postives = 154/287 (53.66%), Query Frame = 1
Query:   19 ELEAAAAVALDPTPVAPGPAADNKQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAARSEAFPAAG--RAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLL-SQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLATMGIVPHVGGLAFNPA 870
            ELE A A+ LDPT V       + +  QA+   ++AS  E    C   L ++ S   +F  LQVL   A++     A   +  +R VL+ ++ +++     E   +KNKLA + VL  + + L  WPT F +L       PV +D+ LRI+   DEEVV   V  + + + H+ AIKD MR    + T+ + W ++L +   S+P +  +CL+ ++ Y+ WID+SL+VN+KF+P  +  L + + R  AC C+ ++V KGM  + ++ LL  + ++  V   A + A
Sbjct:    3 ELEKAIAIQLDPTKVTEA----DLRAAQAYTAQVVASP-EGLRFCCEKLFSSQSPQVKFFCLQVLTDVAKNRYATLAPPEKTGLREVLIKWIREHLVQHQDEQAAIKNKLAYILVLFFKQDYLAQWPTFFSELFGLLQLGPVVIDMFLRIIKTIDEEVVSVEVQRSAEEHTHNIAIKDRMRDD-CINTMVEIWYQILVTYRTSIPQLTRECLAVLRPYITWIDLSLIVNEKFIPFFFECLPNVQFRREACDCITQVVAKGMPPLQKLDLLVRLKVLELVNSAATDDA 283          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: A0A2V0NUT8_9CHLO (Exportin-T n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUT8_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 2.540e-30
Identity = 87/260 (33.46%), Postives = 136/260 (52.31%), Query Frame = 1
Query:   82 DNKQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAARS--EAFPAAGRAHIRGVLMDFVGKN--VDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRL-LSQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPE--LRAPACKCLYELVHKGMDDVSRVQLLATMGIVP 840
            D ++R  A+L  + AS  E W  C     AT     +F  LQ L    R+      A  +  I+G L+ ++ ++  V++     P+++NKLA + V +++ E    WPT F+DL+ A    P   D++ R+M   DE+V+   +  + +       +KD+MR    +A + + W  L L+   S P +AA  L+T   YV WIDI L+ NDKFMPLL   +  P   LRA A  C+ E+V K M+  ++VQL+  + IVP
Sbjct:   25 DLRERATAYLNQLKASP-EGWKFCVERFSATPYPEVKFWCLQTLHEVVRAYYTQLDAQSQGAIKGALLTWLQRDCTVESAGALPPFLRNKLAQVLVAIVQLEYPAVWPTFFRDLVAAARQGPGLADMLCRVMVAVDEDVISLEIPRSQEEAKLSMHLKDSMRDR-CIADVAEGWYELALAHRASRPQLAAFVLTTAARYVHWIDIGLVANDKFMPLLLELMEAPHSGLRAAATDCVIEVVSKRMEPAAKVQLVENLKIVP 282          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: A0A0D2KJN1_9CHLO (Exportin-T n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KJN1_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 1.600e-29
Identity = 81/258 (31.40%), Postives = 139/258 (53.88%), Query Frame = 1
Query:   88 KQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAARSE--AFPAAGRAHIRGVLMDFVGKN--VDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRL-LSQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPE--LRAPACKCLYELVHKGMDDVSRVQLLATMGIVP 840
            ++R  A+L ++ AS  E W  C      T     +F  LQ L    R+      A  ++ I+G L+ ++ ++  V++     P+++NKLA + V +++ E    WPT F+DL++A    P   D++ R+M   DE+++   +    ++      +KD+MR    +  + + W +L L+   + P +AA  L+T   Y+ WIDI L+ ND+FMPLL   +  P   LRA A  C+ E+V K M+  ++VQL+A++ IVP
Sbjct:   25 RERATAYLNSLKASQ-EGWKFCVERFSPTAFPEVKFWCLQTLHEVVRAYYLQMDAQSQSTIKGALLTWLQRDCTVESAGALPPFLRNKLAQVLVSIVQLEYPAVWPTFFRDLISAAHQGPGLADMLCRVMVAVDEDIISLDIPRREEAKL-SMHVKDSMRDR-CIGDVAEAWYQLALAHRAARPQLAAFVLATAARYIHWIDIGLVANDRFMPLLLELMESPHSALRAAATDCVIEVVSKRMEPAAKVQLVASLKIVP 279          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: A0A8K1FDJ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ6_PYTOL)

HSP 1 Score: 128 bits (321), Expect = 2.060e-29
Identity = 77/255 (30.20%), Postives = 129/255 (50.59%), Query Frame = 1
Query:   85 NKQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAARSEAFPAAGRAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLLSQANS---MPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHP-ELRAPACKCLYELVHKGMDDVSRVQLLATMGIV 837
             K + + +  A+ AS+   W  C      +     +F  LQ ++ A        A    IR  L+ ++  NV  + G+AP++K KLA++  +LI+ +    WPTAF +LL         +++  RI+T  +EE+V+     T    A +  IKDAMR    +A   D    +L   +    M  ++   L T+K Y++W+DI L+VND+F+PLL+  L     LR PA  C++E++ KGM    R+ L+  + ++
Sbjct:   32 TKLQAETYCNAVKASSTG-WRLCLELFEYSEHQEVKFYALQAIQEALTKGIADDAVTMQIRSELLAWLRANVAFVEGKAPFLKTKLAVVITVLIKRDYPDRWPTAFHELLALLPMGASMVEMYFRILTAINEEIVEFDATRTQAEAAANMRIKDAMRESSCMADTFDAIYNVLVNCDVSAVMVELSYNALQTLKRYISWVDIGLIVNDRFVPLLFKILRESASLRCPAANCIFEIIDKGMSSEKRLALITQLKLL 285          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: UPI000C6D1FFB (LOW QUALITY PROTEIN: exportin-T-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D1FFB)

HSP 1 Score: 125 bits (313), Expect = 2.330e-28
Identity = 78/236 (33.05%), Postives = 123/236 (52.12%), Query Frame = 1
Query:  190 RFLLLQVLE--AAARSEAFPAAGRAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLL-SQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLAT-MGIVPHVGGLAFNPADPVDQ 885
            +F  LQV+E     R E   A  +  IR  +  ++    ++  GE  ++KNK+A L  ++   +    WP+ F DLL   S  P   D  LRI+   + +V    +  T K    +  IKD +R    V  L + W  ++ S  NS P ++  CL  +  YVAWIDI L+ ND+F+ +L HFL H +LR  AC C++E+++KGMD  ++ +L+ + M ++   G L  N A+  D 
Sbjct:   52 KFFCLQVIEHFIKTRYEQSDATQQQQIREFICYWIRTQPESHKGEETFIKNKVAQLVSMVFLIDYPHHWPSFFADLLQTLSFGPSATDYYLRILLAINSDVADREIARTQKDLERNTLIKDTIREH-CVNDLVNSWYHIVTSYQNSHPELSCLCLEVIGGYVAWIDIGLIANDRFVGILVHFLGHQDLREAACDCIHEIINKGMDPAAKTKLVESFMAVLDQAGVL--NTAEDDDS 284          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: A0A5D6XP74_9STRA (Exportin-T n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP74_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.370e-28
Identity = 79/275 (28.73%), Postives = 137/275 (49.82%), Query Frame = 1
Query:   61 VAPGPAADNKQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAARSEAFPAAGRAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLLSQANS---MPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPE-LRAPACKCLYELVHKGMDDVSRVQLLATMGIVPHVGGLAFNPAD 873
            +A  PA   KQ+ + F  ++ ASA + W         +     +F  LQ L+ A        A  A +R  L+ ++ +N   +  +APY+K KLA++  LLI+ +    WP+AF +LL         +++  R++   +EE+V+     +    A +  IKDAMR   ++    D    +L   ++   M  ++   L T+K Y++W+D++L+VND+ +PLL+  L     LR PA  C++E+V KGM    ++ L   + +V  + GL     D
Sbjct:   23 LADAPAQALKQQAERFCASVKASA-DGWRLALELFEFSEHEEVKFYALQALQEALAKGVADDAVAARVRAALLAWLRENAAFVERKAPYLKTKLAVVVTLLIKRDYPARWPSAFAELLALLPQGAAMVEMYFRVLVAINEEIVEFDAQRSPAEAAANMRIKDAMRESAAMRDTIDAIYNVLVHCDASAVMTELSYSALETLKRYISWVDLALVVNDRLLPLLFTLLRESAALRGPAANCVFEIVDKGMAPEKKLALFQQLQLVDVLRGLPLEDDD 296          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: D3B6B2_POLPP (Exportin-T n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6B2_POLPP)

HSP 1 Score: 124 bits (312), Expect = 3.200e-28
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = 1
Query:  262 IRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLLSQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLATMGIVPHVGGLAFNPAD 873
            ++  L++++ K V  +  E   VKNK A + VLL + E    W + FQ+ L+  S  P  +D+ LR++   DEEVV   V+ +    AH+  IKD MR       +   +  L+    S P +A   L  +K YV WIDI+L+VNDKF+PL +  L +  LR  AC C  E+V+KGMD  +++ L+  + I   V  +A +  D
Sbjct:   80 LKSTLINYL-KMVLAVQNEEAAVKNKYAQIVVLLFKQEYPENWSSFFQEFLSLLSNGPNLIDIFLRVLKAIDEEVVSYDVHRSTAELAHNTFIKDTMRDSAIKDIVLSWYEILVHYHQSNPQLANMTLQNIKYYVGWIDINLIVNDKFIPLFFKLLNNKALREEACDCFKEIVNKGMDSSAKLSLIKQLQITEIVNVVALDDLD 282          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: A0A197JL17_9FUNG (Exportin-T n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JL17_9FUNG)

HSP 1 Score: 124 bits (311), Expect = 4.380e-28
Identity = 103/293 (35.15%), Postives = 147/293 (50.17%), Query Frame = 1
Query:   22 LEAAAAVALDPTPVAPGPAADNKQRCQAFLEAIIASAAETWVTCAS-FLPATTSTP-ARFLLLQVLEAA--ARSEAFPAAGRAHIRGVLMD-----FVGKNVD-TLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVT--------MDLMLRIMTIFDEEVVKATVNNTN--KSNAHDQAIKDAMRTGGSVATLCDCWLRLLSQANSMP-SMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLATMGIV 837
            +E A A AL PT     PA   KQ+   + E + AS  + W +C + ++    STP  R   LQV+E     R+         + R   MD     FV   VD TL  E  Y+KNK A    LL R   + +W T F D+L+  +P P +        +DL LRI+   DEEVV   ++ T+  + N  +  IKD MR    V TL + W  LL++        A   L  +  YVAWIDISL+VN++F+ L+Y FL    +R  A  CL +++ KGM  + ++QL+  +GIV
Sbjct:    4 IEEAVACALSPTA---DPAL--KQQATQYCEQVKASP-DGWQSCLTLYIREPKSTPETRMFCLQVVEEVLMTRTNTLDETRLNYFRQTFMDYIQREFVNNGVDNTLSSEPSYLKNKFAHAVALLFRQTYMKSWTTFFSDMLSLITPLPQSTGKSNMKMVDLFLRILMSIDEEVVNTLISRTSSKEENTLNINIKDRMREQD-VPTLANVWYELLAEYKDRSLDFAEMLLRIVGVYVAWIDISLIVNERFVTLIYSFLLTTSIRNAAADCLTDIIKKGMKPLDKLQLIGILGIV 289          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: UPI0015ABE999 (exportin-T-like isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ABE999)

HSP 1 Score: 123 bits (309), Expect = 7.900e-28
Identity = 84/278 (30.22%), Postives = 139/278 (50.00%), Query Frame = 1
Query:   67 PGPAADNKQRCQAFLEAIIASAAETWVTCASFLPAT--TSTPARFLLLQVLEAAA--RSEAFPAAGRAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLL-SQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLATM-GIVPHVGGLAFNPADPVD 882
            P   A ++Q+  A+ E +  SA + W  CA  L     +S   +F   QVLE     R        +  IR  L+ ++   + +   +  +++NK A +F L    E LT WP  F D+L+    +P   DL LR +   D EVV   + ++ +    +  IKD MR    +  L + W ++L +  ++ P +  QCL  +  YVAWID++L+ ND+F+ LL   ++   LR  AC CL+E+V KGMD V + +L+ ++  ++   G  +    + VD
Sbjct:   11 PNADAPHRQQALAYFEQLKESA-DAWQVCAEALAKNVYSSDHVKFFCFQVLEHQIKFRHAGLSPTQQQLIRETLLKWLQSQLMSAQPQKVFIRNKAAQVFALAFVTEYLTQWPEFFSDVLSVVGLNPRGADLYLRTLLAIDAEVVDRDITHSAEETRRNTLIKDTMREQ-CIPALVESWYQILQAYQHTNPELTCQCLEVVGTYVAWIDLALIANDRFVTLLLSHMSVEVLREEACDCLFEIVSKGMDPVDKTKLVESLCQVLQSAGFFSVEQEEDVD 286          
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Match: XPOT_DICDI (Exportin-T n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=XPOT_DICDI)

HSP 1 Score: 123 bits (309), Expect = 8.140e-28
Identity = 88/258 (34.11%), Postives = 128/258 (49.61%), Query Frame = 1
Query:   67 PGPAADNKQRCQAFLEAIIASAAETWVTCASFLPATTSTPARFLLLQVLEAAA--RSEAFPAAGRAHIRGVLMDFVGKNVDTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDLMLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRLLSQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRAPACKCLYELVHKGMDDVSRVQLLATMGI 834
            P  + D KQ+  A+ E+I   A E W+ C   L  T     +F  LQV +     R E      R ++R  LM++    +     E+  +KNK A + VLL + E L  W T F D L+  SP   ++D+ LRI    DEEVV   V+ +    A +  IKD MR    +  +   W  +L    S P +    L  +K YV WIDISL+VNDKF+PL   +L    +R   C C  E+++KGMD  +++ L+  + I
Sbjct:   14 PNVSEDIKQKALAYTESIKV-APEAWLFCLERLGKTQIVLVKFFCLQVFQEIILHRYETLSKTDRLNLRTGLMNWFRLYLVNNQEESA-IKNKYAQVMVLLFKQEYLENWLTFFDDFLSMLSPGNSSIDIFLRICKSIDEEVVSFDVHRSPAELAQNTFIKDTMRENA-ITKIVASWYEILVHHQS-PPLINMTLQNIKTYVGWIDISLIVNDKFIPLFCKYLGVRVVRDEVCDCFKEIINKGMDPFAKLTLIQQLEI 267          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10714.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HI54_ACACA1.570e-3532.40Exportin-T n=1 Tax=Acanthamoeba castellanii str. N... [more]
A0A2V0NUT8_9CHLO2.540e-3033.46Exportin-T n=1 Tax=Raphidocelis subcapitata TaxID=... [more]
A0A0D2KJN1_9CHLO1.600e-2931.40Exportin-T n=1 Tax=Monoraphidium neglectum TaxID=1... [more]
A0A8K1FDJ6_PYTOL2.060e-2930.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000C6D1FFB2.330e-2833.05LOW QUALITY PROTEIN: exportin-T-like n=1 Tax=Centr... [more]
A0A5D6XP74_9STRA2.370e-2828.73Exportin-T n=1 Tax=Pythium brassicum TaxID=1485010... [more]
D3B6B2_POLPP3.200e-2835.29Exportin-T n=1 Tax=Polysphondylium pallidum (strai... [more]
A0A197JL17_9FUNG4.380e-2835.15Exportin-T n=1 Tax=Linnemannia elongata AG-77 TaxI... [more]
UPI0015ABE9997.900e-2830.22exportin-T-like isoform X1 n=2 Tax=Anguilla anguil... [more]
XPOT_DICDI8.140e-2834.11Exportin-T n=1 Tax=Dictyostelium discoideum TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10714contigS-firma_F_contig10714:121..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog244447.XP_008313518.1
Preferred nameXPOT
PFAMsIBN_N,Xpo1
Max annot lvl33208|Metazoa
KEGG koko:K14288
KEGG Pathwayko03013,map03013
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016363,GO:0017016,GO:0019899,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051020,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
Evalue3.96e-31
EggNOG OGsKOG2021@1|root,KOG2021@2759|Eukaryota,38DUH@33154|Opisthokonta,3BCUQ@33208|Metazoa,3CT5N@33213|Bilateria,483E0@7711|Chordata,48WFH@7742|Vertebrata,49TEK@7898|Actinopterygii
DescriptionExportin, tRNA (nuclear export receptor for tRNAs)
COG categoryJUY
BRITEko00000,ko00001,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size894
Cds size894
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.2592819-CDS-S-firma_F_contig10714:120..10141622815612.2592819-CDS-S-firma_F_contig10714:120..1014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10714 121..1014 -
1696949453.5648088-CDS-S-firma_F_contig10714:120..10141696949453.5648088-CDS-S-firma_F_contig10714:120..1014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10714 121..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10714.966.1prot_S-firma_F_contig10714.966.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10714 121..1014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10714.966.1

>prot_S-firma_F_contig10714.966.1 ID=prot_S-firma_F_contig10714.966.1|Name=mRNA_S-firma_F_contig10714.966.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=298bp
MDLKLPELEAAAAVALDPTPVAPGPAADNKQRCQAFLEAIIASAAETWVT
CASFLPATTSTPARFLLLQVLEAAARSEAFPAAGRAHIRGVLMDFVGKNV
DTLPGEAPYVKNKLALLFVLLIRWELLTTWPTAFQDLLTAFSPSPVTMDL
MLRIMTIFDEEVVKATVNNTNKSNAHDQAIKDAMRTGGSVATLCDCWLRL
LSQANSMPSMAAQCLSTMKEYVAWIDISLLVNDKFMPLLYHFLAHPELRA
PACKCLYELVHKGMDDVSRVQLLATMGIVPHVGGLAFNPADPVDQGG*
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mRNA from alignment at S-firma_F_contig10714:121..1014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10714.966.1 ID=mRNA_S-firma_F_contig10714.966.1|Name=mRNA_S-firma_F_contig10714.966.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=894bp|location=Sequence derived from alignment at S-firma_F_contig10714:121..1014- (Sphaerotrichia firma ET2_F female)
ATGGACCTAAAGCTGCCAGAGCTGGAGGCGGCGGCGGCCGTCGCGCTGGA CCCCACCCCCGTCGCCCCCGGGCCGGCTGCGGACAACAAGCAGCGCTGCC AGGCGTTCCTGGAGGCGATCATTGCCAGCGCGGCGGAGACGTGGGTGACG TGCGCGTCCTTCCTGCCCGCCACCACCTCCACGCCCGCCCGCTTCCTCCT CCTCCAGGTCCTGGAGGCGGCGGCGCGGTCGGAGGCGTTCCCCGCCGCGG GGCGGGCCCACATCCGTGGCGTCCTCATGGACTTTGTGGGCAAGAACGTG GACACACTGCCGGGCGAGGCGCCGTACGTCAAGAACAAGCTGGCGCTGCT GTTCGTGCTGTTGATTCGGTGGGAGCTGTTGACCACGTGGCCGACGGCGT TCCAGGACCTCCTCACCGCGTTTTCGCCGTCGCCTGTCACCATGGACCTC ATGCTGCGCATCATGACCATCTTTGACGAGGAGGTGGTCAAGGCCACGGT GAACAACACCAACAAGAGCAACGCCCACGACCAGGCCATTAAGGACGCTA TGCGGACGGGCGGCAGCGTTGCCACCCTGTGCGACTGCTGGCTCCGCTTG CTGTCCCAGGCCAACTCCATGCCATCCATGGCCGCCCAGTGCCTCAGCAC CATGAAGGAGTACGTCGCCTGGATTGACATCTCCCTCCTGGTGAACGACA AGTTCATGCCCCTGCTGTACCACTTCCTGGCCCACCCGGAGCTGCGCGCC CCCGCCTGCAAGTGCTTGTACGAGTTGGTGCACAAGGGCATGGACGACGT GTCCCGCGTCCAGCTGCTGGCCACCATGGGCATTGTGCCCCATGTGGGCG GCCTCGCCTTTAACCCCGCCGACCCCGTTGACCAGGGTGGGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10714:121..1014-

>mRNA_S-firma_F_contig10714.966.1 ID=mRNA_S-firma_F_contig10714.966.1|Name=mRNA_S-firma_F_contig10714.966.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1788bp|location=Sequence derived from alignment at S-firma_F_contig10714:121..1014- (Sphaerotrichia firma ET2_F female)
ATGGACCTAAAGCTGCCAGAGCTGGAGGCGGCGGCGGCCGTCGCGCTGGA
CCCCACCCCCGTCGCCCCCGGGCCGGCTGCGGACAACAAGCAGCGCTGCC
AGGCGTTCCTGGAGGCGATCATTGCCAGCGCGGCGGAGACGTGGGTGACG
TGCGCGTCCTTCCTGCCCGCCACCACCTCCACGCCCGCCCGCTTCCTCCT
CCTCCAGGTCCTGGAGGCGGCGGCGCGGTCGGAGGCGTTCCCCGCCGCGG
GGCGGGCCCACATCCGTGGCGTCCTCATGGACTTTGTGGGCAAGAACGTG
GACACACTGCCGGGCGAGGCGCCGTACGTCAAGAACAAGCTGGCGCTGCT
GTTCGTGCTGTTGATTCGGTGGGAGCTGTTGACCACGTGGCCGACGGCGT
TCCAGGACCTCCTCACCGCGTTTTCGCCGTCGCCTGTCACCATGGACCTC
ATGCTGCGCATCATGACCATCTTTGACGAGGAGGTGGTCAAGGCCACGGT
GAACAACACCAACAAGAGCAACGCCCACGACCAGGCCATTAAGGACGCTA
TGCGGACGGGCGGCAGCGTTGCCACCCTGTGCGACTGCTGGCTCCGCTTG
CTGTCCCAGGCCAACTCCATGCCATCCATGGCCGCCCAGTGCCTCAGCAC
CATGAAGGAGTACGTCGCCTGGATTGACATCTCCCTCCTGGTGAACGACA
AGTTCATGCCCCTGCTGTACCACTTCCTGGCCCACCCGGAGCTGCGCGCC
CCCGCCTGCAAGTGCTTGTACGAGTTGGTGCACAAGGGCATGGACGACGT
GTCCCGCGTCCAGCTGCTGGCCACCATGGGCATTGTGCCCCATGTGGGCG
GCCTCGCCTTTAACCCCGCCGACCCCGTTGACCAGGGTGGGTGAATGGAC
CTAAAGCTGCCAGAGCTGGAGGCGGCGGCGGCCGTCGCGCTGGACCCCAC
CCCCGTCGCCCCCGGGCCGGCTGCGGACAACAAGCAGCGCTGCCAGGCGT
TCCTGGAGGCGATCATTGCCAGCGCGGCGGAGACGTGGGTGACGTGCGCG
TCCTTCCTGCCCGCCACCACCTCCACGCCCGCCCGCTTCCTCCTCCTCCA
GGTCCTGGAGGCGGCGGCGCGGTCGGAGGCGTTCCCCGCCGCGGGGCGGG
CCCACATCCGTGGCGTCCTCATGGACTTTGTGGGCAAGAACGTGGACACA
CTGCCGGGCGAGGCGCCGTACGTCAAGAACAAGCTGGCGCTGCTGTTCGT
GCTGTTGATTCGGTGGGAGCTGTTGACCACGTGGCCGACGGCGTTCCAGG
ACCTCCTCACCGCGTTTTCGCCGTCGCCTGTCACCATGGACCTCATGCTG
CGCATCATGACCATCTTTGACGAGGAGGTGGTCAAGGCCACGGTGAACAA
CACCAACAAGAGCAACGCCCACGACCAGGCCATTAAGGACGCTATGCGGA
CGGGCGGCAGCGTTGCCACCCTGTGCGACTGCTGGCTCCGCTTGCTGTCC
CAGGCCAACTCCATGCCATCCATGGCCGCCCAGTGCCTCAGCACCATGAA
GGAGTACGTCGCCTGGATTGACATCTCCCTCCTGGTGAACGACAAGTTCA
TGCCCCTGCTGTACCACTTCCTGGCCCACCCGGAGCTGCGCGCCCCCGCC
TGCAAGTGCTTGTACGAGTTGGTGCACAAGGGCATGGACGACGTGTCCCG
CGTCCAGCTGCTGGCCACCATGGGCATTGTGCCCCATGTGGGCGGCCTCG
CCTTTAACCCCGCCGACCCCGTTGACCAGGGTGGGTGA
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