mRNA_S-firma_F_contig1069.932.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1069.932.1
Unique NamemRNA_S-firma_F_contig1069.932.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 3.700e-110
Identity = 161/198 (81.31%), Postives = 180/198 (90.91%), Query Frame = 1 
Query:  202 MGAPKLLGGVALIVSTVFYLLPMSMHLAFGADIPDYIYLGMGMLIGLPILGFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDLDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQSQ 795
            MGAPKLLGGVAL+ STVFY+LPMSMH+AFGADIP   Y GM +LIGLPILGF+AFEMWKT+ +NRR+R+ R+KLE I+ QSFGCI+PQVL+SFVVF VR++KRGC GSSWVE+GE AV  NLCAA K++GAVDTEGPLRRLCEATFG +LDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQ Q
Sbjct:    1 MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ 198
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BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: A0A7S2V258_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.350e-16
Identity = 49/146 (33.56%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:  337 GLPILGFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDLDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAM 774
            G  ++   A  ++K + + R  R  +  +E + EQ++ CI  QVL+S VVF V++ +R    S +  +GE+ V       V+++ + D    L+ LC    G D  V V+ G G +GPTGLAVG+ R+ +GP LA+ V  +I++++
Sbjct:   71 GAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFVQ------VELSQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVREGYGPSLANHVGMAIEQSI 210
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BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: A0A7S4EDG4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDG4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.460e-6
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1 
Query:  385 SENRRIRRARKKLEE----IQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVK-VTGAVDTEGPLRRLCEATFGPDL-----DVIVYCGGGTAGPTGLAVGVGRQNFGPYLA 741
            + +RR  RAR +  +    I+ Q+F C+ PQ    FVVF VR+ +RG   S  V +  D +   L    +   G +DTE  LR L EA   P       +V+ + G    GPTGLA G+  +   P  A
Sbjct:  133 ARDRRRDRARTRGAQSQRAIKSQTFQCVAPQTPGEFVVFPVRVARRGVAASRVVSLDGDELRVELDTKQRDAAGRLDTEASLRSLLEAALLPRFPTGAAEVVTFYG---EGPTGLAGGLALRRGAPDFA 258
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTL5_ECTSI3.700e-11081.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V258_9STRA1.350e-1633.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EDG4_9STRA9.460e-634.11Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1069contigS-firma_F_contig1069:15899..19898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008700.1
Exons6
Model size1483
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1069.932.1prot_S-firma_F_contig1069.932.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1069 16584..19697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.7139869-UTR-S-firma_F_contig1069:15898..165831622815608.7139869-UTR-S-firma_F_contig1069:15898..16583Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 15899..16583 -
1696949451.0936546-UTR-S-firma_F_contig1069:15898..165831696949451.0936546-UTR-S-firma_F_contig1069:15898..16583Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 15899..16583 -
1622815608.8077428-UTR-S-firma_F_contig1069:19697..198981622815608.8077428-UTR-S-firma_F_contig1069:19697..19898Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 19698..19898 -
1696949451.1579194-UTR-S-firma_F_contig1069:19697..198981696949451.1579194-UTR-S-firma_F_contig1069:19697..19898Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 19698..19898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.724352-CDS-S-firma_F_contig1069:16583..166601622815608.724352-CDS-S-firma_F_contig1069:16583..16660Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 16584..16660 -
1696949451.1028724-CDS-S-firma_F_contig1069:16583..166601696949451.1028724-CDS-S-firma_F_contig1069:16583..16660Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 16584..16660 -
1622815608.7359724-CDS-S-firma_F_contig1069:17111..172041622815608.7359724-CDS-S-firma_F_contig1069:17111..17204Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 17112..17204 -
1696949451.11187-CDS-S-firma_F_contig1069:17111..172041696949451.11187-CDS-S-firma_F_contig1069:17111..17204Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 17112..17204 -
1622815608.7481267-CDS-S-firma_F_contig1069:17797..179191622815608.7481267-CDS-S-firma_F_contig1069:17797..17919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 17798..17919 -
1696949451.1212373-CDS-S-firma_F_contig1069:17797..179191696949451.1212373-CDS-S-firma_F_contig1069:17797..17919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 17798..17919 -
1622815608.7613149-CDS-S-firma_F_contig1069:18208..182761622815608.7613149-CDS-S-firma_F_contig1069:18208..18276Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 18209..18276 -
1696949451.1303878-CDS-S-firma_F_contig1069:18208..182761696949451.1303878-CDS-S-firma_F_contig1069:18208..18276Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 18209..18276 -
1622815608.7777798-CDS-S-firma_F_contig1069:18663..188191622815608.7777798-CDS-S-firma_F_contig1069:18663..18819Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 18664..18819 -
1696949451.1395051-CDS-S-firma_F_contig1069:18663..188191696949451.1395051-CDS-S-firma_F_contig1069:18663..18819Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 18664..18819 -
1622815608.7920396-CDS-S-firma_F_contig1069:19616..196971622815608.7920396-CDS-S-firma_F_contig1069:19616..19697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 19617..19697 -
1696949451.1488357-CDS-S-firma_F_contig1069:19616..196971696949451.1488357-CDS-S-firma_F_contig1069:19616..19697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 19617..19697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1069.932.1

>prot_S-firma_F_contig1069.932.1 ID=prot_S-firma_F_contig1069.932.1|Name=mRNA_S-firma_F_contig1069.932.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=199bp
MGAPKLLGGVALIVSTVFYLLPMSMHLAFGADIPDYIYLGMGMLIGLPIL
GFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRI
NKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDL
DVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQSQ*
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mRNA from alignment at S-firma_F_contig1069:15899..19898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1069.932.1 ID=mRNA_S-firma_F_contig1069.932.1|Name=mRNA_S-firma_F_contig1069.932.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4000bp|location=Sequence derived from alignment at S-firma_F_contig1069:15899..19898- (Sphaerotrichia firma ET2_F female)
GTTACCTGGGTACAGCATCGCCCACGTGCCATCGCAATAGGACACTGCTG
TGGCTGGGCCTCCATCTGAAGCTGCTGTGTTACTGTCTGTGACACGCTGC
TTCAGATTGATCCGGTCGTGTGGGCGACAAAACACACGTTTGGTTCTTTT
GTCGTCGGGGAACAGAGAGTTGTTGTGCGCCGCAGCGAAGGAGAGATCAT
CATGGGAGCCCCGAAGCTGCTCGGTGGGGTCGCGTTGATCGTGTCCACGG
TGTTCTACCTCCTTCCTATGTCCATGCACCTGGTGAGTGCTTGCGTGTGT
CACATGCATAGGTGTCATACACTGCCGAGATCGAGGGAGAGAGAGAGAGA
GAGAGAGCCAGCGAGAGGGAACCCCAGGCCTCTTGAAGGTTCAAGTTCAC
CGCAGCGATCATGCCTTGAGTTCCAAGGACGGACGGGATGCTGAAGCAGT
GAGCCTTGGCCGAGAGACGGAGTGGCATGTATTATAAGCTACAGCCTGTG
GTTGTTCAGGCGGATCGTCAGTGTGGTATCGTACATAAATGAAAGCGGAG
CTGTTCGGCATGTTTGTTGCCGGGGTTTCATGTTGTACAACCCGTCGACT
GCTGTCTGGGAGAGGTTACTCGACGAATTGCTCCCAGCCCGCCTCTGTGT
TCTTTGGCCACCTTCATAGCAGGAGCCCAGCAGTACCGTCTGGATATGAG
TGATGAACAATAGCGTCCAACACGATGACAAAGTAGGTGATGACGTGAGA
AAGGTGCCACTCCCCGTGTTCGGCTGGAAGCATACACACACCTCCTGGAA
TCCATAACCGGTCAACTCACCACCGGCTGCAGCAGCATTCCCCGAATACT
AGCTACGCGTGAACGGCGTGCTGTGGCGAGATTCTCCTTCTTTCTGTTCT
GTCATCTTGCATCCTTCATTTCCCATCGACGGCACCAAAAGAGCTACTAC
TGCTCCCGAATGTTTCTAATGGCAATGTACATCGAAGTACACACCTATGG
ACCGCCCGTAACAGCTCGAAATGGCGCATTGCGCACTTCTTGCCTCACTG
GCTGTTGTCCGGTCCGCACACCCACACAGGCTTTCGGCGCAGATATTCCC
GACTATATCTATTTGGGCATGGGCATGCTGATCGGCCTCCCGATCCTCGG
CTTCGTCGCCTTCGAGATGTGGAAAACTATCTCCGAAAACCGACGGATAC
GCCGAGCGCGCAAGAAGTTGGAGGAAATTCAAGAGGTGATCCACCCGTCC
GTCGTGCACGTCTGTGCTGCACACGCAACACACCACTGATACCTGGACCT
GCGAGAAACACGTTCTCTGGACTACCCGAGCGCCGCCGGGTAGCGTAATC
GTCGGGGTGCAGTTTGGGCGCTGTGTCCCACGTGCCGCGTCTCCACTAAT
TGGTTTACGGTTGGCATTCGGAAACAGTCTGGGCCGAAGATAAAAGTATC
AGGTTGACGGCATGATACCGACCCTCCCGAGGGGGGGCACTTCTTTTTTG
AATTTTTTCGCGTTGAAGGTTGTCAGCCAGCTCGTGTCCAAAATGTCAAA
ATCGGCCATTTTCAGCAGTGGCGCGCTAACGTTTCTCCGCGCGCCGCTCT
TGCTTGCTTGTCCGCCGTGCAGCAATCGTTCGGGTGCATCCAGCCACAAG
TCCTCAACTCGTTTGTGGTGTTTTCCGTCAGGATCAACAAGTGAGTCAAC
AACAGTCGCCGCCCACCCAAAGCTGACCGTCTCGCGCGCAGCTATTCCTC
GTATCGCGCTGTTGTTCGTACGCACCGTTGTAGGCAGACTTGTGTCGCCG
GCGATGTCGTTGCAGAGACGGCACACCACACCTTACATCAGAGTGTCCGG
CGTCAACCTACCCACACGTACGCGACGCGTTTCCATGGCTCTATGGCCCT
TTAGAAACCTCCTAGTCTTGATTACGGCGCCCCCATGATAAACCTGGTCG
CTCAATCCGTCTCTATTGTTACTTCCCAGGCGAGGCTGCGTCGGCTCGTC
TTGGGTAGAAATGGGCGAGGATGCCGTGGTGGCCAACCTTTGTGCCGCCG
TCAAAGTCACGGGAGCGGTGGACACGGAGGGTCCCCTCAGACGGCTTTGT
GGTGAGCCAGAGTAGCGTGCGTACCAGCGGAGACGGATCTGGTGCGCTTT
TCGGCCGCCAAGCGCATCAGGCCGCGGTATTTTTGTCCTCCAACGACGCG
TGCCTTGCTTTCCAGTGTTCAGGGTTGTTTTGTGTTGCCTCCTTGCGCCG
TGGCGAGGCAGAGTTTGTTCTCTCACACAAGTCCCTGGTAGAAATCCTAA
TCCTTGTTGAGGCGCCAGGCATGGGCCGTGCTTCCTACAAGGTATGGAGG
CCTCTCTACGTTGAGAGTGGTGTTCTCTGGGAACGATTTGTTTAGGTTCC
CCCCCCAAAGGGCTACTATGTTGGTGATTGGCATGTCTCCTGCCTCCACT
ACGTTTCCCACTGCATCAGCTTTTCTCCTGTGAGCTGAACGGCCTGTCTA
GTAGGAAGTGGTGGAGGATAGGATAGGATAGCGGAACCACTACTGACGTT
GTTGTGAATTGGGTGTCTCGTGAAGTAACTCACCTGATCACCCACCGCTG
ATGGTAGCTGCTCTCTCTAATTCTGCCATCGTTGGCGCGCGTGCGTGTTC
ATCTGGTCTTGTTTCTGCGGCGGTTGGTCAATCAAACCAACCAGAGGCAA
CCTTCGGTCCGGACTTAGACGTGATCGTGTACTGCGGGGGCGGTACAGCA
GGACCGACGGGGCTGGCGGTGGGAGTGGGACGCCAAAGTGAGTGCCGTTT
CATGCCGTACCGTCGACGGCTTCATGAGTGTAGAGCATTTTGGGTCTTGT
TAAATCATTGATAGCAGCGGCGAGACCAGTGAGTCCGGTCGTCGACTTTG
ATGCGCTGGAACAAAACCGAGGGCGGAACGATTCTGCTGTTTGTGAAAGC
AACGGAAGGAGTTTCAGTTGATCTCAGAAGCTGGGACTTTTGTCTCCAGC
GGCAAGCCATCGTCCCCCGATTACTCACCCACCCTCATTTACGCAATCGT
AGCCTGCTCTCTTCGTGTGCTGCAAGCTCGTCCCTTGGTGCCAGCTCCTC
TATTCACACAACAAGCTGCTGGTGATGTTGATACTTGTAGCCTGTAGTCG
CTGCGAGCAATCGCCCCCACCGCCCTGTCTAAGCCAACGCTCACATGCCC
GTCGCTCTCGACTTGCCTTTGATTGGTTGCCTTTCCAGATTTCGGTCCGT
ACCTGGCAAGCCGGGTGGCGCACTCTATCAAGGAGGCCATGAGGCTGGGA
ATCCAGAGCCAATGAGTAACGACCTCGTCTGACGGTGCTCGCATGCGACT
CCGAACGGTATTTAGCGCGGTCGACACTCGCTGTAGATTAGCGCTAGAGG
ACGAGATTAATCTCTTTGCGAAAAGCAAGTCTTGTTTGTAGTCTTTCTGT
GTGGCCGTGAAAGTGCGCTCTTTTGTCGCTGTTCAACGAGAGGCGCTCGT
GCCGCTTTCAGTCCTTCAGTTGTGTTTTTGTGTCATTGGTGCTTGAAGGT
CATCTTCGCGTCCTCGGGGCCACCACCACGAGGAAGAGCTTGCTCGACGG
GGAGGGGAAAAATGGCTGCGCTTCGAAGTATATTGTCGAGTCTGAGCGAA
CGGTTTTTCATTGTTTTTGTCGAGCAGAGGTGACGGCGTCATTCTGCCGG
GTACGGTGTGCGTCCACAGAGTGCCTGGACTTGCCCGCTCGCGCCCTACG
CCTACTCGGTGCCGTGCGGAAAGGAGATTTCTTTTTTGTCGCAAGCCGGA
TTTTCGGAGACATGCTATGATACAACCACCTTGCTGGCAATCGTCACCCC
GATGTATACACTCTGCAGTGATGTCCACCTGGTGCTCTCCAAACTACGCC
AGCGGCATTCGGAGTTGTTGACGCTCAAGGGACACGCGATTTTAAACTTA
AAAAAGCCGAGACGATTGAATTTGACGCCGTCATGGATACGCACCCACGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1069:15899..19898-

>mRNA_S-firma_F_contig1069.932.1 ID=mRNA_S-firma_F_contig1069.932.1|Name=mRNA_S-firma_F_contig1069.932.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1194bp|location=Sequence derived from alignment at S-firma_F_contig1069:15899..19898- (Sphaerotrichia firma ET2_F female)
ATGGGAGCCCCGAAGCTGCTCGGTGGGGTCGCGTTGATCGTGTCCACGGT
GTTCTACCTCCTTCCTATGTCCATGCACCTGATGGGAGCCCCGAAGCTGC
TCGGTGGGGTCGCGTTGATCGTGTCCACGGTGTTCTACCTCCTTCCTATG
TCCATGCACCTGGCTTTCGGCGCAGATATTCCCGACTATATCTATTTGGG
CATGGGCATGCTGATCGGCCTCCCGATCCTCGGCTTCGTCGCCTTCGAGA
TGTGGAAAACTATCTCCGAAAACCGACGGATACGCCGAGCGCGCAAGAAG
TTGGAGGAAATTCAAGAGGCTTTCGGCGCAGATATTCCCGACTATATCTA
TTTGGGCATGGGCATGCTGATCGGCCTCCCGATCCTCGGCTTCGTCGCCT
TCGAGATGTGGAAAACTATCTCCGAAAACCGACGGATACGCCGAGCGCGC
AAGAAGTTGGAGGAAATTCAAGAGCAATCGTTCGGGTGCATCCAGCCACA
AGTCCTCAACTCGTTTGTGGTGTTTTCCGTCAGGATCAACAACAATCGTT
CGGGTGCATCCAGCCACAAGTCCTCAACTCGTTTGTGGTGTTTTCCGTCA
GGATCAACAAGCGAGGCTGCGTCGGCTCGTCTTGGGTAGAAATGGGCGAG
GATGCCGTGGTGGCCAACCTTTGTGCCGCCGTCAAAGTCACGGGAGCGGT
GGACACGGAGGGTCCCCTCAGACGGCTTTGTGGCGAGGCTGCGTCGGCTC
GTCTTGGGTAGAAATGGGCGAGGATGCCGTGGTGGCCAACCTTTGTGCCG
CCGTCAAAGTCACGGGAGCGGTGGACACGGAGGGTCCCCTCAGACGGCTT
TGTGAGGCAACCTTCGGTCCGGACTTAGACGTGATCGTGTACTGCGGGGG
CGGTACAGCAGGACCGACGGGGCTGGCGGTGGGAGTGGGACGCCAAAAGG
CAACCTTCGGTCCGGACTTAGACGTGATCGTGTACTGCGGGGGCGGTACA
GCAGGACCGACGGGGCTGGCGGTGGGAGTGGGACGCCAAAATTTCGGTCC
GTACCTGGCAAGCCGGGTGGCGCACTCTATCAAGGAGGCCATGAGGCTGG
GAATCCAGAGCCAATGAATTTCGGTCCGTACCTGGCAAGCCGGGTGGCGC
ACTCTATCAAGGAGGCCATGAGGCTGGGAATCCAGAGCCAATGA
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