prot_S-firma_F_contig1065.880.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1065.880.1
Unique Nameprot_S-firma_F_contig1065.880.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length254
Homology
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BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.760e-28
Identity = 97/176 (55.11%), Postives = 105/176 (59.66%), Query Frame = 0 
Query:    1 AAADCAVHSTAAEHFRSWSSN---EGAVAAATAAXXXATALLKRGEAPFKQDEADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEANNHERSSGGDNADGVGGRLTPRSMLTISARGH---HSPSSS----PVRGKRISPTSSPPSTGMWTPVASNYYH 166
            AAAD AVHS AAEHFRSW+SN   EGAVA     XXX   LLKRGE PFKQDEAD+AKS LSGLAT F  SP+R A+E      KRSS    DSP   +     N   + G             RSMLTISAR     HSPSSS    PVRGKR+SP SSP S+ M TP  S  YH
Sbjct: 2894 AAADRAVHSKAAEHFRSWTSNGDSEGAVAXXXXXXXXXXXLLKRGETPFKQDEADHAKSLLSGLATAFHSSPTRVAKET----WKRSSGGFGDSPAEQDNGRGRNGAEAGG-------------RSMLTISARDRDLAHSPSSSVSSSPVRGKRVSPMSSPLSSRMMTPHLSMDYH 3052
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BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.280e-27
Identity = 99/188 (52.66%), Postives = 112/188 (59.57%), Query Frame = 0 
Query:    1 AAADCAVHSTAAEHFRSWSSN---EGAVAAATAAXXXATALLKRGEAPFKQDEADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEANNHERSSGGDNADGVGGRLTPRSMLTISARG-------HHSPSSSPVRGKRISPTSSPPSTGMWTP-VASNYYHSAGELLADAAT 177
            AAAD AVHS A EHFRSW+SN   EGAVA     XXX   LLKRGE PFKQDEAD+AKS LSGLAT F  SP+R AEE      KRS     DSP           + + GG N    GGR    SMLTISAR          S SSSPVRGKR+SP SSP S+ M TP ++ +Y+ S    + D+AT
Sbjct: 3184 AAADRAVHSKAEEHFRSWTSNGDSEGAVAXXXXXXXXXXXLLKRGETPFKQDEADHAKSLLSGLATAFHSSPTRVAEET----WKRSPGGFGDSPA---------EQDNGGGRNGAEAGGR----SMLTISARDTDLAQSPSSSLSSSPVRGKRVSPMSSPLSSRMMTPHLSMDYHRSESPGIGDSAT 3354
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1065.880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP6_ECTSI2.760e-2855.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGP4_9PHAE1.280e-2752.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1065contigS-firma_F_contig1065:2468..3229 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1065.880.1mRNA_S-firma_F_contig1065.880.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1065 2468..3230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1065.880.1 ID=prot_S-firma_F_contig1065.880.1|Name=mRNA_S-firma_F_contig1065.880.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=254bp
AAADCAVHSTAAEHFRSWSSNEGAVAAATAAAATATALLKRGEAPFKQDE
ADNAKSTLSGLATVFRPSPSRAAEEPNHNPRKRSSSALFDSPTTTNRPEA
NNHERSSGGDNADGVGGRLTPRSMLTISARGHHSPSSSPVRGKRISPTSS
PPSTGMWTPVASNYYHSAGELLADAATAAATATATVPDRSSSPGGSGGGL
AAARVQNGDKDNPANANAHANNASTRTSVDEVAVAVAVAEPRTPTSSCLV
PPLP
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