mRNA_S-firma_F_contig10647.878.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10647.878.1
Unique NamemRNA_S-firma_F_contig10647.878.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10647.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10647contigS-firma_F_contig10647:4210..4545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size337
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.7006764-CDS-S-firma_F_contig10647:4209..45451622815603.7006764-CDS-S-firma_F_contig10647:4209..4545Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10647 4210..4545 +
1696949447.4599319-CDS-S-firma_F_contig10647:4209..45451696949447.4599319-CDS-S-firma_F_contig10647:4209..4545Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10647 4210..4545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10647.878.1prot_S-firma_F_contig10647.878.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10647 4210..4545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10647.878.1

>prot_S-firma_F_contig10647.878.1 ID=prot_S-firma_F_contig10647.878.1|Name=mRNA_S-firma_F_contig10647.878.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
AVFHSLCVLARLVAHFADTSPIRVVCRSCVGPSLGGLLDASVNQRRTLRI
VTKPYLCRGCPREAPSRLRHKPEQMGLRLTHADWRQNSGTHAVTLSEPTH
TYQSIDAVARR*
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mRNA from alignment at S-firma_F_contig10647:4210..4545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10647.878.1 ID=mRNA_S-firma_F_contig10647.878.1|Name=mRNA_S-firma_F_contig10647.878.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10647:4210..4545+ (Sphaerotrichia firma ET2_F female)
GCAGTGTTTCATAGTCTATGTGTACTTGCGCGCCTCGTCGCCCATTTCGC
GGACACATCACCGATACGCGTGGTATGTCGCTCCTGTGTTGGCCCTAGCC
TTGGCGGCCTCCTCGACGCGAGTGTGAATCAGCGGCGGACCCTACGCATC
GTCACAAAGCCATATTTGTGTAGGGGATGTCCGCGAGAGGCCCCCAGCCG
TTTGAGACACAAACCCGAACAGATGGGTCTGCGCTTAACGCATGCCGACT
GGCGTCAGAACTCGGGCACGCACGCGGTGACACTTTCTGAACCCACACAC
ACATACCAGTCAATAGATGCCGTTGCTCGGAGATAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10647:4210..4545+

>mRNA_S-firma_F_contig10647.878.1 ID=mRNA_S-firma_F_contig10647.878.1|Name=mRNA_S-firma_F_contig10647.878.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10647:4210..4545+ (Sphaerotrichia firma ET2_F female)
GCAGTGTTTCATAGTCTATGTGTACTTGCGCGCCTCGTCGCCCATTTCGC
GGACACATCACCGATACGCGTGGTATGTCGCTCCTGTGTTGGCCCTAGCC
TTGGCGGCCTCCTCGACGCGAGTGTGAATCAGCGGCGGACCCTACGCATC
GTCACAAAGCCATATTTGTGTAGGGGATGTCCGCGAGAGGCCCCCAGCCG
TTTGAGACACAAACCCGAACAGATGGGTCTGCGCTTAACGCATGCCGACT
GGCGTCAGAACTCGGGCACGCACGCGGTGACACTTTCTGAACCCACACAC
ACATACCAGTCAATAGATGCCGTTGCTCGGAGATAGGCAGTGTTTCATAG
TCTATGTGTACTTGCGCGCCTCGTCGCCCATTTCGCGGACACATCACCGA
TACGCGTGGTATGTCGCTCCTGTGTTGGCCCTAGCCTTGGCGGCCTCCTC
GACGCGAGTGTGAATCAGCGGCGGACCCTACGCATCGTCACAAAGCCATA
TTTGTGTAGGGGATGTCCGCGAGAGGCCCCCAGCCGTTTGAGACACAAAC
CCGAACAGATGGGTCTGCGCTTAACGCATGCCGACTGGCGTCAGAACTCG
GGCACGCACGCGGTGACACTTTCTGAACCCACACACACATACCAGTCAAT
AGATGCCGTTGCTCGGAGATAG
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