mRNA_S-firma_F_contig10639.867.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig10639.867.1
Unique Name	mRNA_S-firma_F_contig10639.867.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: A0A6H5KS20_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS20_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.390e-41
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGGAA 333
            SFGVVC+EVATRMEPF+GM P QV+ AV     RP IP  ASASPD++PLM RCWKQDPAQRP+GF+PVV++L RVV RVGDPR+H SAANDV S PG KH G  A
Sbjct:  419 SFGVVCYEVATRMEPFRGMMPVQVMRAVADMGSRPEIPAGASASPDVVPLMERCWKQDPAQRPDGFMPVVEELGRVVRRVGDPRHHSSAANDVFSSPGAKHGGSGA 524

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: D7G890_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G890_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.010e-39
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGGAAS 336
            SFGVVCFEV TRMEPF+GM P QVI AV+  E+RP IPEWAS SPD++PLM +CWKQDP  RPEGF PVV+ L+ VV R GDPRNH + A D TS PG + S G +S
Sbjct:  361 SFGVVCFEVITRMEPFKGMNPTQVIKAVVLNERRPQIPEWASGSPDVVPLMEQCWKQDPGHRPEGFGPVVQTLASVVSRNGDPRNHSAVAVDATSSPGTQRSVGPSS 467

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.040e-39
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSG 324
            SFGV+CFEV TR EPF+G RPA VIGAVLY+ +RP IPE ASASPD++PLM +CW+QDP +RPEGF PVV+ L+ VV R GDPRNH +AA DVTS  GVK  G
Sbjct:  361 SFGVLCFEVVTRTEPFKGKRPAHVIGAVLYRNERPHIPEEASASPDVVPLMEQCWRQDPVERPEGFGPVVRALASVVSRFGDPRNHNAAAADVTSSRGVKLGG 463

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: A0A6H5KGQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.340e-39
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGGAA 333
            SFGVVC+EVATRMEPF+GM P QV+ AV     RP IP   SASPD++ LM +CWKQDPAQRPEGF+PVV++L RVV RVGDPR+H SAANDV S   VKHSGG A
Sbjct:  365 SFGVVCYEVATRMEPFKGMMPVQVMRAVADMGSRPEIPAGPSASPDVVRLMEQCWKQDPAQRPEGFMPVVEELGRVVGRVGDPRHHSSAANDVFSSTCVKHSGGGA 470

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.920e-35
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGV 312
            SFGV+CFEV TR EPF+G  PA VI AVLY+ +RP IPE ASA+P+++PLM +CW+QDP +RPEGF PVV+ L+ VV R GDPRNH +A  D+TS PGV
Sbjct:  361 SFGVLCFEVVTRTEPFKGRIPAHVIRAVLYENERPQIPEGASAAPEVVPLMEQCWRQDPVERPEGFGPVVRALASVVSRDGDPRNHNAATADLTSSPGV 459

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: A0A6H5JLJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLJ5_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.080e-35
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGGAAS 336
            SFGV+CFEVATR EPF+G RPAQVIGAVLY+ +RP +P+ ASASPD++PLM  CWK+DP +RPEGF PVV  L+ VV RVGDPR+H + A   +S  G    G A+S
Sbjct:  361 SFGVLCFEVATRTEPFKGKRPAQVIGAVLYRNERPQLPQGASASPDVVPLMEHCWKEDPKERPEGFEPVVVTLANVVSRVGDPRHHGATAMRGSSSSGPNVYGDASS 467

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.370e-30
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGGAAS 336
            SF VVCFEV TRMEPF+GM P QVI AV+  E+ P + E ASASP ++PLM +CWKQDP  RP+GF P VK L+ VV R G PR+H + A D TS PG + S G +S
Sbjct:  391 SFCVVCFEVITRMEPFKGMNPTQVIKAVVLNERLPQMLERASASPHVVPLMEQCWKQDPTHRPDGFGPEVKTLASVVSRNGHPRHHNAVAVDATSSPGTQRSVGPSS 497

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: D7FHK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.140e-28
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 1

Query:   52 MEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTSPPGVKHSGG 327
            M+PF+GM   QV+ AV ++ QRP IP+WASASPD++PLM +CWKQDP  RPEGF PVV+ L+ VV R GDPRN  +   D TS  GVK SGG
Sbjct:    1 MQPFKGMNRTQVVNAVAWQGQRPQIPQWASASPDVVPLMEQCWKQDPGHRPEGFGPVVQTLTSVVSRDGDPRNRSAVDVDYTSSSGVKCSGG 92

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: D8LLM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.920e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1

Query:   52 MEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDP 264
            ME F+G +  QVI AV  K +RP  P+ ASASPD++PLM + WKQDPA RP GF PVV+D     ER  +P
Sbjct:    1 MELFKGFKQTQVIRAVADKGKRPENPQGASASPDVVPLMEQRWKQDPADRPYGFGPVVRDKRTEEEREHEP 71

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BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Match: B9RJZ0_RICCO (Map3k delta-1 protein kinase, putative n=3 Tax=Ricinus communis TaxID=3988 RepID=B9RJZ0_RICCO)

HSP 1 Score: 71.6 bits (174), Expect = 3.070e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1

Query:   16 SFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASPDILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVE 249
            SFGV+ +E+ T  +P+ G+ PAQV+GAV ++ +R TIP+  + SP ++ LM  CW  DPAQRP  F  +V+ L ++++
Sbjct:  864 SFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLTIPQ--NTSPALVSLMESCWADDPAQRPS-FGKIVESLKKLLK 938

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10639.867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KS20_9PHAE	1.390e-41	70.75	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D7G890_ECTSI	3.010e-39	66.36	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D8LQ15_ECTSI	3.040e-39	68.93	Kinesin light chain-like protein n=1 Tax=Ectocarpu...	[more]
A0A6H5KGQ4_9PHAE	3.340e-39	69.81	Protein kinase domain-containing protein n=1 Tax=E...	[more]
A0A6H5JY67_9PHAE	1.920e-35	64.65	Protein kinase domain-containing protein n=1 Tax=E...	[more]
A0A6H5JLJ5_9PHAE	3.080e-35	62.62	Protein kinase domain-containing protein n=2 Tax=E...	[more]
A0A6H5JUB0_9PHAE	1.370e-30	58.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FHK3_ECTSI	1.140e-28	60.87	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LLM4_ECTSI	2.920e-15	54.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
B9RJZ0_RICCO	3.070e-12	43.59	Map3k delta-1 protein kinase, putative n=3 Tax=Ric...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10639	contig	S-firma_F_contig10639:331..666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	2880.D7G890
PFAMs	Pkinase,Pkinase_Tyr,TPR_12
Max annot lvl	2759\|Eukaryota
Evalue	4.94e-40
EggNOG OGs	COG0515@1\|root,KOG0192@2759\|Eukaryota
Description	protein kinase activity
COG category	KLT
Hectar predicted targeting category	other localisation
Exons	1
Model size	336
Cds size	336
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815602.912743-CDS-S-firma_F_contig10639:330..666	1622815602.912743-CDS-S-firma_F_contig10639:330..666	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10639 331..666 +
1696949446.9585657-CDS-S-firma_F_contig10639:330..666	1696949446.9585657-CDS-S-firma_F_contig10639:330..666	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig10639 331..666 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10639.867.1	prot_S-firma_F_contig10639.867.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig10639 331..666 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig10639:331..666+
coding sequence from alignment at S-firma_F_contig10639:331..666+

protein sequence of mRNA_S-firma_F_contig10639.867.1

>prot_S-firma_F_contig10639.867.1 ID=prot_S-firma_F_contig10639.867.1|Name=mRNA_S-firma_F_contig10639.867.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
MLHPRSFGVVCFEVATRMEPFQGMRPAQVIGAVLYKEQRPTIPEWASASP
DILPLMGRCWKQDPAQRPEGFVPVVKDLSRVVERVGDPRNHRSAANDVTS
PPGVKHSGGAAS

mRNA from alignment at S-firma_F_contig10639:331..666+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig10639.867.1 ID=mRNA_S-firma_F_contig10639.867.1|Name=mRNA_S-firma_F_contig10639.867.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10639:331..666+ (Sphaerotrichia firma ET2_F female)
ATGCTGCACCCTCGCAGTTTTGGTGTGGTCTGCTTCGAGGTGGCCACCCG
GATGGAGCCGTTCCAGGGAATGAGACCTGCCCAGGTGATCGGGGCGGTCC
TCTACAAAGAGCAGCGGCCTACGATTCCAGAATGGGCGTCTGCCTCGCCC
GATATCCTTCCTCTGATGGGGCGATGCTGGAAGCAAGACCCAGCGCAGCG
CCCTGAAGGATTTGTGCCCGTGGTGAAGGATCTATCTAGAGTGGTAGAGC
GCGTGGGAGACCCGCGCAATCACCGCTCGGCTGCGAACGATGTCACCTCG
CCACCGGGTGTGAAACACAGTGGTGGTGCGGCGAGC

Coding sequence (CDS) from alignment at S-firma_F_contig10639:331..666+

>mRNA_S-firma_F_contig10639.867.1 ID=mRNA_S-firma_F_contig10639.867.1|Name=mRNA_S-firma_F_contig10639.867.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10639:331..666+ (Sphaerotrichia firma ET2_F female)
ATGCTGCACCCTCGCAGTTTTGGTGTGGTCTGCTTCGAGGTGGCCACCCG
GATGGAGCCGTTCCAGGGAATGAGACCTGCCCAGGTGATCGGGGCGGTCC
TCTACAAAGAGCAGCGGCCTACGATTCCAGAATGGGCGTCTGCCTCGCCC
GATATCCTTCCTCTGATGGGGCGATGCTGGAAGCAAGACCCAGCGCAGCG
CCCTGAAGGATTTGTGCCCGTGGTGAAGGATCTATCTAGAGTGGTAGAGC
GCGTGGGAGACCCGCGCAATCACCGCTCGGCTGCGAACGATGTCACCTCG
CCACCGGGTGTGAAACACAGTGGTGGTGCGGCGAGCATGCTGCACCCTCG
CAGTTTTGGTGTGGTCTGCTTCGAGGTGGCCACCCGGATGGAGCCGTTCC
AGGGAATGAGACCTGCCCAGGTGATCGGGGCGGTCCTCTACAAAGAGCAG
CGGCCTACGATTCCAGAATGGGCGTCTGCCTCGCCCGATATCCTTCCTCT
GATGGGGCGATGCTGGAAGCAAGACCCAGCGCAGCGCCCTGAAGGATTTG
TGCCCGTGGTGAAGGATCTATCTAGAGTGGTAGAGCGCGTGGGAGACCCG
CGCAATCACCGCTCGGCTGCGAACGATGTCACCTCGCCACCGGGTGTGAA
ACACAGTGGTGGTGCGGCGAGC