mRNA_S-firma_F_contig10619.844.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10619.844.1
Unique NamemRNA_S-firma_F_contig10619.844.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10619.844.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.680e-21
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QAWQQTATWLNGSGPVPVAMALEAHGHRWSELWTESENFGIWQASHRLAG 150
            +AWQQTATWLNGSGPVPVA ALE+HG RWSELWTESENFG+WQ+SHRLAG
Sbjct:  568 KAWQQTATWLNGSGPVPVAAALESHGQRWSELWTESENFGVWQSSHRLAG 617
[Close]
BLAST of mRNA_S-firma_F_contig10619.844.1 vs. uniprot
Match: A0A6H5KU41_9PHAE (Avl9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU41_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.780e-21
Identity = 141/294 (47.96%), Postives = 149/294 (50.68%), Query Frame = 1 
Query:    1 QAWQQTATWLNGSGPVPVAMALEAHGHRWSELWTESENFGIWQASHRLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGRPDVPPRSGVDTFTYE-SGDTYTGAWRNGRRHGVGVYEERATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKSVIRGTETXXXXXXXXXXXXXXVHCDARGN 879
            +AWQQTATWLNGSGPVPVA ALEAHG RWSELWTESENF +WQ+SHRLAG                  XXXXXXXXXXXXXXXXXXX                                                                                           +   +  P+SGV T+TYE SGDTYTG+WRNGRRH          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G SVIRGTET              VHCDARGN
Sbjct:  155 KAWQQTATWLNGSGPVPVATALEAHGKRWSELWTESENFAVWQSSHRLAGANGNPSEAFPSSSSLRSEXXXXXXXXXXXXXXXXXXXHSSDPNKAVLRPSTGASFSNGNGSSSTLANALLCSNGLAGAGAFFIDDVSSSSSAK-----------------------------------KAGSEGAPQSGVKTYTYEGSGDTYTGSWRNGRRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNSVIRGTETYSGRWKDGEFHGGGVHCDARGN 413
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10619.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT00_ECTSI1.680e-2188.00Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KU41_9PHAE1.780e-2147.96Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10619contigS-firma_F_contig10619:686..4363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FT00
PFAMsAvl9,MORN
Max annot lvl2759|Eukaryota
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Evalue2.76e-22
EggNOG OGsCOG4642@1|root,COG5253@1|root,KOG0229@2759|Eukaryota,KOG0231@2759|Eukaryota
DescriptionMORN repeat-containing protein
COG categoryDZ
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons4
Model size894
Cds size894
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10619.844.1prot_S-firma_F_contig10619.844.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10619 686..4363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.675793-CDS-S-firma_F_contig10619:685..8211622815600.675793-CDS-S-firma_F_contig10619:685..821Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 686..821 -
1696949445.2422566-CDS-S-firma_F_contig10619:685..8211696949445.2422566-CDS-S-firma_F_contig10619:685..821Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 686..821 -
1622815600.6909618-CDS-S-firma_F_contig10619:1942..20221622815600.6909618-CDS-S-firma_F_contig10619:1942..2022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 1943..2022 -
1696949445.2547069-CDS-S-firma_F_contig10619:1942..20221696949445.2547069-CDS-S-firma_F_contig10619:1942..2022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 1943..2022 -
1622815600.7024322-CDS-S-firma_F_contig10619:2837..34321622815600.7024322-CDS-S-firma_F_contig10619:2837..3432Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 2838..3432 -
1696949445.2634742-CDS-S-firma_F_contig10619:2837..34321696949445.2634742-CDS-S-firma_F_contig10619:2837..3432Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 2838..3432 -
1622815600.7143593-CDS-S-firma_F_contig10619:4280..43631622815600.7143593-CDS-S-firma_F_contig10619:4280..4363Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 4281..4363 -
1696949445.2788422-CDS-S-firma_F_contig10619:4280..43631696949445.2788422-CDS-S-firma_F_contig10619:4280..4363Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10619 4281..4363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10619.844.1

>prot_S-firma_F_contig10619.844.1 ID=prot_S-firma_F_contig10619.844.1|Name=mRNA_S-firma_F_contig10619.844.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=298bp
QAWQQTATWLNGSGPVPVAMALEAHGHRWSELWTESENFGIWQASHRLAG
GGGGGTTGNPLEASSSSSSRLGKASSFSGTTASSSNNNNASHGGANKRSH
NTSSSSPSSSNSIINASSSAASSSATLANALLCSNGLAAAGAFFVDSSSG
SGSGSNHDDDGNDGRDGGGVSRTAGGGGRGRPDVPPRSGVDTFTYESGDT
YTGAWRNGRRHGVGVYEERATGNSYEGDWVDDARHGRGVMTSGAKDFLYD
GDWVHDKRTGTGKSVIRGTETYSGGWKDGEFHGRGVHCDARGNVYDGE
back to top

mRNA from alignment at S-firma_F_contig10619:686..4363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10619.844.1 ID=mRNA_S-firma_F_contig10619.844.1|Name=mRNA_S-firma_F_contig10619.844.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3678bp|location=Sequence derived from alignment at S-firma_F_contig10619:686..4363- (Sphaerotrichia firma ET2_F female)
CAGGCGTGGCAGCAGACGGCTACATGGCTGAACGGGTCTGGGCCGGTGCC
GGTGGCGATGGCCCTCGAGGCCCACGGCCACAGGTAGATACGTTCGTGTG
GTCCTGTTGTTGCTGTTGTTGTTGTTGTTATTGCTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTCTTGACATAAAAAGCCCGTCCTATCTTTCCGCC
CAGGGCTTCCTTTTGTCCGTATTGTACCGATCCGACACTAGCCCTTTACT
GTACAATAGGTAACTGTTTTCTGTTTTCTCATGCAGGCTGCATAACGCCG
CTGAGAGCTTTTTGTGTCCTAGCCGGGCTTGTTTCTGTCCCGTGTTGCCT
AGGTATGGCTTGTTTTTATTCCACCATTCCGAGAGGTGTCGTATCTTTCT
TTCGTCTTCGTGACTTTTGTCCCCCTATCCTGTTTCGATCTCTTTTTTTT
TGTGCCCGTCTGCCTTCGCCAAAGCGTGGCGAGTTCCGCATGGCTGCGGC
ATCTCCGATAATCGACGCGTCGTTTCGGTGTCTTCACACGCGCGCACCGC
TCGGGTGCTGCGTGGTTCTGTCGGTCTTGCTCCGCTTTTTTTTCTTGGAA
AGAAACCCAAAGGCACCTCGGCCGATGCGCCCTGTTGTTTCCTGACACGT
GTTCCTGGTTCAGGCCAATGTCGGTCTTGCTCCGCTTTTTTTTCTTGGAA
AGAAACGCAAAGAAATCCGGCTGATTCGCCCTGTTGTTTCATGACACGTG
TGCCTGATTCAGGCCAAAAAAGAGACCCAAAAATATACGTTGAAAATCTG
GCCACCCTTTACCTGCCTGCTGTCACGATGTGCAAATCGCTCGATCTTCG
TTTCACCCTTCTCCATCAACACCCCCACCCATCTGATCTTGTTTGTTTAC
CCCCCCCCCCACCACCACCAAAAACAAACAGATGGTCCGAACTGTGGACG
GAGTCGGAGAACTTCGGGATCTGGCAAGCATCCCACCGTCTAGCGGGCGG
CGGCGGCGGCGGCACGACCGGAAACCCTCTGGAGGCGTCGTCCTCGTCCT
CCTCGCGGCTAGGCAAGGCTTCCTCGTTCTCGGGCACCACCGCCTCCTCC
TCCAACAACAACAACGCCAGCCACGGCGGCGCCAACAAACGCAGCCACAA
CACGTCGTCTTCCTCTCCTTCCTCCTCCAACAGCATCATCAACGCCTCCA
GCTCCGCGGCCTCGTCTTCCGCCACCCTCGCGAACGCGCTGCTGTGCAGC
AACGGCCTGGCGGCGGCGGGCGCCTTCTTCGTCGACAGCAGCAGCGGCAG
CGGCAGCGGCAGCAACCACGACGACGACGGCAACGACGGCAGAGATGGCG
GGGGGGTTTCCAGGACCGCTGGCGGTGGTGGCCGGGGGAGACCCGATGTT
CCTCCCCGGTCCGGCGTGGACACGTTCACGTACGAGAGCGGCGACACGTA
CACGGGGGCGTGGAGGAATGGGCGGCGGCACGGGGTGGGCGTGTACGAGG
AGAGGGCGACGGGGAATAGTTATGAGGTGAGCGAAAAAGTTTTTTTTTTT
TTTTTTTGTCTTTGTTGTTGTTGGTGTTGTTGTTGTTGCTGTTGTTGGTG
GTGTTGTTATTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGGTGGTGGTGGTGGTGGTGAGTTGGCGACAGTTTTCGTGTTTGA
GTACATACATATTTTTTGCGTACTCGTTTAGCTTGAGTGACCTCCACCGA
TTTTACGGGCAATACAACAGTCATGAGTGTGAGAAAGAAGGTGGTTTGTC
GTTGTTGTTGTTCGGGGAACAGTTTAATTTTTTCAGGTTGTTTTTGAAAG
AACACCAGAAAATGAAGGACATAATACGGGAACTCACGGAGAATTTGGCG
GTATTCCATACCATGATGTAGTGTTGCTATTCGCCACCTTGTCAGTTCGC
TTGGTTTGTAGCACTACCTGGACTGTTTTATTCCGTTAGCTTGTGGTTCA
CTTTGGTTTTCTGGCAATGTTTGGGCCCGGCGATATTCTTGCTTTTGGCT
CACAAGGGCGCTTGGTGCTTCCGCGCGGTACAGTAGACTGGACGTACTGT
ACGTGGTGTTTTTACTCCTTGTTCGTTGGTTGCGCACACGGCGTCCGTCG
TTGCTTGCTCTTCCGCGCCCTTGCGGCAGCTTTGTGGTGCCGACGTGCAG
CCTGTGCGCTTGTCTTTGGTTGTACGATAGTACTCTAGCCTCTCGCTCAA
GACTTCCATCTGGTTTGTGGGTTTGCATCTGGTCGACCTGCTGCCTCACT
CGAGTGCCCTCGCTACGTACAACTTCCCTTTTTTTTCTCAGGGCGACTGG
GTCGACGACGCTCGGCACGGAAGAGGGGTCATGACGTCGGGCGCGAAGGA
CTTCTTGTACGACGGAGACTGGTGAGCAACAGCAGCATCACACAAGTAGT
AGTCTTATTTCGTTGCTGCACGCCTTGCTGATGGCCTCACCTTTGCGTTG
CGAACACAGCAATTCGCGTCGTGCAAACGTGGTACTATTATACGAAGTAT
CCGTACTGCTGTACGGCGCCAATTTCTGGGGAGTAGTTTCCTGTGTTCAC
CGCCAGATGGGACGAAGTGTTGTCGTCGTTGACGACGGTGTTGATGCGTC
TTGTCGATCAAAAAGAGTACCCCCCGAGACGAGACAAAGAGTCCTTACGA
CAACTAGCGGGGCTTTGTGGCCCAGGGGTGCGCGGGGCAAGAAAGCGGCA
AGCCGAGCCGGTGTCATCGCAGGCTCTCGTAGGGCTAAATCACGATGCTG
TATGTATGTACCTTTTAGCCGTCTTTGCTACCGTCTGTAGCACCGATGCG
CCACTCTTCCCCCAGAATCCCACCGATTCTTGGTTGCCGCCCGCTCCTGC
CGTGCAGCTTGGATGACGGAAGGTTGGTGGATCAGCCACATAAAACACCG
CAAGTCCTGAGTGTCTAAGTATCGGTACGAAAGCCCTCCTCCGAAAAGAA
AGCCAGGCTGAGACTTTCAACGAAAACAAAACAAAAAAGCGCGGGGGGGG
GGGGCATATCTGGCGAGTAAATTGTTATCACTCTGAATCAACCCACTACG
ACTGGCGGCAGCGATCGCTGGCGTCGCAGAAGAAAGTCAGGCTGCCTGTC
CTGTGTTTTTCGGCAGCGGGCCGGTCCGGTGCTGCCGTCTCGCCGTTGTT
GTTTGTGGTCGATTCCTGTGTGCCTCGCCGCGATGGATGCAAGGCAAGAA
AAACCGAAAAACCGGCCCTAAAGAGCCGGTGTCTCCGATTGTTTGTGATT
TCCGGCGAGAGTCGCTCACGCTACACATTACCGCGTGTCTCCTAGATATA
TTGTATGCCCAAAACCAAAAATAGATGAATAAAAAATCACACACACACGA
CAAAATAATTCTAATATTGTCTGCCCCAAACCAAAAGTTAAATAATTAAT
TGATTAATTAAAAACACACTGTCGTAGTTTTCTCCGTTTCGCTTATCGCT
GTCTGTCGCCGCTTGTTGTGGTTTCTTTTGTGTCCTTGGCAGGGTGCACG
ACAAGAGAACCGGGACCGGAAAGTCGGTGATCAGGGGCACCGAGACTTAC
AGCGGGGGCTGGAAGGACGGGGAGTTCCACGGGCGAGGCGTTCACTGCGA
CGCCAGGGGGAACGTGTATGACGGGGAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10619:686..4363-

>mRNA_S-firma_F_contig10619.844.1 ID=mRNA_S-firma_F_contig10619.844.1|Name=mRNA_S-firma_F_contig10619.844.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1788bp|location=Sequence derived from alignment at S-firma_F_contig10619:686..4363- (Sphaerotrichia firma ET2_F female)
CAGGCGTGGCAGCAGACGGCTACATGGCTGAACGGGTCTGGGCCGGTGCC
GGTGGCGATGGCCCTCGAGGCCCACGGCCACAGCAGGCGTGGCAGCAGAC
GGCTACATGGCTGAACGGGTCTGGGCCGGTGCCGGTGGCGATGGCCCTCG
AGGCCCACGGCCACAGATGGTCCGAACTGTGGACGGAGTCGGAGAACTTC
GGGATCTGGCAAGCATCCCACCGTCTAGCGGGCGGCGGCGGCGGCGGCAC
GACCGGAAACCCTCTGGAGGCGTCGTCCTCGTCCTCCTCGCGGCTAGGCA
AGGCTTCCTCGTTCTCGGGCACCACCGCCTCCTCCTCCAACAACAACAAC
GCCAGCCACGGCGGCGCCAACAAACGCAGCCACAACACGTCGTCTTCCTC
TCCTTCCTCCTCCAACAGCATCATCAACGCCTCCAGCTCCGCGGCCTCGT
CTTCCGCCACCCTCGCGAACGCGCTGCTGTGCAGCAACGGCCTGGCGGCG
GCGGGCGCCTTCTTCGTCGACAGCAGCAGCGGCAGCGGCAGCGGCAGCAA
CCACGACGACGACGGCAACGACGGCAGAGATGGCGGGGGGGTTTCCAGGA
CCGCTGGCGGTGGTGGCCGGGGGAGACCCGATGTTCCTCCCCGGTCCGGC
GTGGACACGTTCACGTACGAGAGCGGCGACACGTACACGGGGGCGTGGAG
GAATGGGCGGCGGCACGGGGTGGGCGTGTACGAGGAGAGGGCGACGGGGA
ATAGTTATGAGATGGTCCGAACTGTGGACGGAGTCGGAGAACTTCGGGAT
CTGGCAAGCATCCCACCGTCTAGCGGGCGGCGGCGGCGGCGGCACGACCG
GAAACCCTCTGGAGGCGTCGTCCTCGTCCTCCTCGCGGCTAGGCAAGGCT
TCCTCGTTCTCGGGCACCACCGCCTCCTCCTCCAACAACAACAACGCCAG
CCACGGCGGCGCCAACAAACGCAGCCACAACACGTCGTCTTCCTCTCCTT
CCTCCTCCAACAGCATCATCAACGCCTCCAGCTCCGCGGCCTCGTCTTCC
GCCACCCTCGCGAACGCGCTGCTGTGCAGCAACGGCCTGGCGGCGGCGGG
CGCCTTCTTCGTCGACAGCAGCAGCGGCAGCGGCAGCGGCAGCAACCACG
ACGACGACGGCAACGACGGCAGAGATGGCGGGGGGGTTTCCAGGACCGCT
GGCGGTGGTGGCCGGGGGAGACCCGATGTTCCTCCCCGGTCCGGCGTGGA
CACGTTCACGTACGAGAGCGGCGACACGTACACGGGGGCGTGGAGGAATG
GGCGGCGGCACGGGGTGGGCGTGTACGAGGAGAGGGCGACGGGGAATAGT
TATGAGGGCGACTGGGTCGACGACGCTCGGCACGGAAGAGGGGTCATGAC
GTCGGGCGCGAAGGACTTCTTGTACGACGGAGACTGGGCGACTGGGTCGA
CGACGCTCGGCACGGAAGAGGGGTCATGACGTCGGGCGCGAAGGACTTCT
TGTACGACGGAGACTGGGTGCACGACAAGAGAACCGGGACCGGAAAGTCG
GTGATCAGGGGCACCGAGACTTACAGCGGGGGCTGGAAGGACGGGGAGTT
CCACGGGCGAGGCGTTCACTGCGACGCCAGGGGGAACGTGTATGACGGGG
AGGGTGCACGACAAGAGAACCGGGACCGGAAAGTCGGTGATCAGGGGCAC
CGAGACTTACAGCGGGGGCTGGAAGGACGGGGAGTTCCACGGGCGAGGCG
TTCACTGCGACGCCAGGGGGAACGTGTATGACGGGGAG
back to top