mRNA_S-firma_F_contig106.824.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI) HSP 1 Score: 387 bits (993), Expect = 2.100e-124 Identity = 204/314 (64.97%), Postives = 236/314 (75.16%), Query Frame = 3
Query: 66 TMGDGDHVSIVSSMASYETAPSSRGGRSPTSSACQHQDPREANGLDQAEVMTVINEYRRQHGAPSLQWSETCAREAQKRASHRSGSAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQTGDFARNVLPRGSVYDGDDNMVRLAID--DSSSRSASAAGSTLP------SFVRVTTVNTEIKSLRSKNGKFRFQVLPDRNIVVRQAEKIIWTSGSRVSR--PVSSPFRLVLQKNGDLVAYDSSSRAFWSSETANCGPA 977
T GDH SIVSS+A ++T S GG S T+S+ + LD++EV+ INEYRR+HGAP L+WS CAREAQ+RASH SG + E+GENLARST +WRD T AC+ SIH+WQ EEAGYDY KPGLSSNT HFT NVW+LTTHVGFGV RA YKGKST+WVVAYF P+GNQ GDFARNVL RGSVY GDDNMVR A+D S R A ++VRV T N ++K LRS NGKF FQVLPDRNI+VRQAE+IIW+SGSR + PV +PFRLVLQKNGDLV YDS++R FWSSETANCGPA
Sbjct: 17 TPSSGDHASIVSSIAPFDTVCS--GGSSSTTSSNARRI------LDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHQWQKEEAGYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRATYKGKSTMWVVAYFSPRGNQAGDFARNVLRRGSVYHGDDNMVRRAVDTVSPSGRHPRKAPXXXXXXXXXGTYVRVETANADVKVLRSANGKFTFQVLPDRNIIVRQAERIIWSSGSRSAGKPPVGAPFRLVLQKNGDLVGYDSAARVFWSSETANCGPA 322
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A6H5KHY2_9PHAE (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY2_9PHAE) HSP 1 Score: 314 bits (804), Expect = 4.980e-98 Identity = 157/223 (70.40%), Postives = 173/223 (77.58%), Query Frame = 3
Query: 414 QNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQTGDFARNVLPRGSVYDGDDNMVRLAIDDSSS-----RSASA---AGSTLPSFVRVTTVNTEIKSLRSKNGKFRFQVLPDRNIVVRQAEKIIWTSGSRVSR--PVSSPFRLVLQKNGDLVAYDSSSRAFWSSETANCGPAPYTLTLKDDGNCVLFDGRWVARWAT 1052
Q EEA YDY KPGLSSNT HFT NVW+LTTHVGFGV RA YKG+ST+WVV YF P+GNQ GDFARNVLPRGSVY GDDNMVR A+D S R A A AG ++VRV T ++K LRS NGKF FQVLPDRNI+VRQAE++IW SGSR + P +PFRLVLQKNGDLV YDSS R FWSSETA CGP PYTLT++DDG CVLFDGRW ARWAT
Sbjct: 13 QKEEARYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRAKYKGESTMWVVGYFSPRGNQAGDFARNVLPRGSVYHGDDNMVRRAVDTVSPSGQHPRKAPAGRHAGEAPGAYVRVETAYADVKPLRSANGKFTFQVLPDRNIIVRQAERVIWNSGSRSADKPPFGAPFRLVLQKNGDLVGYDSSGRVFWSSETAKCGPPPYTLTMQDDGQCVLFDGRWKARWAT 235
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: D7FLA1_ECTSI (Contains SCP domain which is found in plant PR1 and cysteine-rich proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA1_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.310e-24 Identity = 69/152 (45.39%), Postives = 86/152 (56.58%), Query Frame = 3
Query: 198 LDQAEVMTVINEYRRQHGAPSLQWSETCAREAQKRAS-----HRSGSAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYK-GKSTV-WVVAYFFPKGNQTGDFARNVLPRGSV 632
+D +++ IN +RR+HGA LQW TCA AQ A+ H R FGE+LA + + D TT C+ +I+ WQ E YDY P S T HFT NVW+ TTHVGFG A+ + GK V +VVA FF GN F NVLP SV
Sbjct: 1 MDTQKILDTINTHRRRHGAADLQWDATCATAAQNWANRGYVIHEQDGGR-FGESLAVTDTNY--DATTECINAINLWQQEGTLYDYENPAFSPATRHFTQNVWRRTTHVGFGFGSAVDQYGKYWVSYVVAKFFTPGNVVDQFEGNVLPPVSV 149
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A4U8YVD0_OULSP (mRNA n=1 Tax=Oulactis sp. TaxID=2093647 RepID=A0A4U8YVD0_OULSP) HSP 1 Score: 97.1 bits (240), Expect = 5.880e-19 Identity = 60/150 (40.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query: 198 LDQAEVMTVINEYRRQHGAPSLQWSETCAREA---------QKRASHRSGSAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQTGDFARNVLP 620
D +E +T N R H A LQW T A + Q H SG +GENL S S + +C ++ W +E A YDY PG +SNT HFT VWK TTHVG G++ G ++ +VVA + P GN G FA NVLP
Sbjct: 79 FDVSECLTANNLNRSSHQATDLQWDATLASASADWALTLAQQNSMQHSSGP---YGENLYYS-STSNIGTVASCKDAVEAWYSEIAYYDYNNPGFASNTGHFTQVVWKATTHVGVGIAAVTSGGFTSTYVVARYTPAGNLQGAFAANVLP 224
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A3B1IN89_ASTMX (SCP domain-containing protein n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IN89_ASTMX) HSP 1 Score: 93.2 bits (230), Expect = 3.770e-18 Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 3
Query: 210 EVMTVINEYRRQHGAPSLQWSETCAREAQKRASHRSG------SAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQT--GDFARNVLPRGSVYD 638
E + N YR++HGAP L S+ +R A+K A H S RE+GENL + S + T ++ W NE Y++++PG SS T HFT VWK T VG+GV+ GK TV+VV + P GN T G F +NVLP G+ D
Sbjct: 25 EFLQTHNTYRKKHGAPPLTISQDLSRSAKKWAEHLLSNKTLQHSNREYGENLYYAFSSGGKSLTGR--EAVDSWYNEIKDYNFSRPGFSSGTGHFTQVVWKDTKEVGYGVAT---DGK-TVFVVGQYLPPGNFTNPGAFEKNVLPAGTPVD 169
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A2R8QR25_DANRE (SCP domain-containing protein n=3 Tax=Danio rerio TaxID=7955 RepID=A0A2R8QR25_DANRE) HSP 1 Score: 90.1 bits (222), Expect = 3.020e-17 Identity = 58/160 (36.25%), Postives = 82/160 (51.25%), Query Frame = 3
Query: 189 ANGLDQAEVMTVINEYRRQHGAPSLQWSETCAREAQKRASHR------SGSAREFGENLARSTSLAWRDQTTACVA--SIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGN--QTGDFARNVLPRGSVYD 638
A G +AE + V N YR+QHGAP L +++ R AQ+ A H + S + +GENL AW ++ W E Y++++PG SS T HFT VWK T +G G++ +T++VV + P GN G F +NVLP GS D
Sbjct: 1 ATGSFEAEFLQVHNAYRKQHGAPPLTFNKNLCRSAQQWAEHLLSTKTLAHSNKGYGENLY----YAWSSANKKLTGHEAVDSWYGEIKDYNFSRPGFSSKTGHFTQVVWKDTKELGVGLAT----DGNTIFVVGQYLPAGNIANAGYFEKNVLPTGSKLD 152
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A3B1J2T8_ASTMX (SCP domain-containing protein n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J2T8_ASTMX) HSP 1 Score: 88.6 bits (218), Expect = 9.860e-17 Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 3
Query: 204 QAEVMTVINEYRRQHGAPSLQWSETCAREAQKRASHRSG------SAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQT--GDFARNVLPRGSVYDGDDNM 653
+ E + N YR +HGAP L S+ R A+ A + S +E+GENL + S + T ++ W NE Y++++PG SS T HFT VWK T VG+GV+ GK TV+VV + P GN T G F +NVLP G+ D NM
Sbjct: 7 EVEFLQTHNTYRNKHGAPPLTISQDLCRSAKSWADYLLSIKTLQHSNKEYGENLYYAFSSGGKSLTGH--EAVDSWYNEVKDYNFSRPGFSSATGHFTQVVWKDTKEVGYGVAT---DGK-TVFVVGQYLPPGNFTNPGAFEKNVLPAGTPVDPKSNM 158
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: UPI000BBDC663 (uncharacterized protein LOC103023418 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBDC663) HSP 1 Score: 94.0 bits (232), Expect = 5.990e-16 Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 3
Query: 195 GLDQAEVMTVINEYRRQHGAPSLQWSETCAREAQKRASHRSG------SAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQT--GDFARNVLPRGSVYD 638
G + E + N YR++HGAP L S+ +R A+K A H S RE+GENL + S + T ++ W NE Y++++PG SS T HFT VWK T VG+GV+ GK TV+VV + P GN T G F +NVLP G+ D
Sbjct: 190 GSFEEEFLQTHNTYRKKHGAPPLTISQDLSRSAKKWAEHLLSNKTLQHSNREYGENLYYAFSSGGKSLTGR--EAVDSWYNEIKDYNFSRPGFSSGTGHFTQVVWKDTKEVGYGVAT---DGK-TVFVVGQYLPPGNFTNPGAFEKNVLPAGTPVD 339
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: UPI000C038E87 (ectin-like isoform X1 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C038E87) HSP 1 Score: 86.7 bits (213), Expect = 6.270e-16 Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 3
Query: 198 LDQAEVMTVINEYRRQH-GAPSLQWSETCAREAQKRASHRSGSAR---EFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQTGDFARNVLPRGS 629
+D + N R +H G P L+W+ET A+ A+K A + + + + E+ + ++ T C ++ W E YDY+ PG SS T HFT +WK TTHVG ++++ K ++VVA + P GN G F NVLP+ S
Sbjct: 27 VDPDACLQAHNAERARHSGTPPLKWNETLAKHAEKWAKYLASNDKFEHEYNTGEGENLYYSYGSPLTTCGDAVTAWYEEIKDYDYSNPGFSSKTGHFTAVIWKSTTHVGAALAKSADGTK--IYVVARYSPPGNFRGKFKENVLPQTS 172
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Match: A0A3B1IWP5_ASTMX (SCP domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IWP5_ASTMX) HSP 1 Score: 86.3 bits (212), Expect = 8.330e-16 Identity = 60/152 (39.47%), Postives = 78/152 (51.32%), Query Frame = 3
Query: 210 EVMTVINEYRRQHGAPSLQWSETCAREAQKRASH-------RSGSAREFGENLARSTSLAWRDQTTACVASIHRWQNEEAGYDYTKPGLSSNTDHFTNNVWKLTTHVGFGVSRALYKGKSTVWVVAYFFPKGNQT--GDFARNVLPRGSVYD 638
E + N YR +HGA L S R AQ A H + S +FGENL + S + T ++ W NE Y+Y++PG SS T HFT VWK T +G+GV+ GK TV+VV + P GN T G F +NVLP G+ D
Sbjct: 18 EFLQSHNTYRNKHGAQPLTISRELCRSAQAWAEHLLSIKTLQHSSGGKFGENLFYTWSSGGKSLTGR--EAVDSWYNEVKDYNYSRPGFSSGTGHFTQVVWKDTKELGYGVAT---DGK-TVFVVGQYLPPGNFTNPGAFEKNVLPAGTPLD 163 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig106.824.1 >prot_S-firma_F_contig106.824.1 ID=prot_S-firma_F_contig106.824.1|Name=mRNA_S-firma_F_contig106.824.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=333bp MGDGDHVSIVSSMASYETAPSSRGGRSPTSSACQHQDPREANGLDQAEVMback to top mRNA from alignment at S-firma_F_contig106:52785..56283- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig106.824.1 ID=mRNA_S-firma_F_contig106.824.1|Name=mRNA_S-firma_F_contig106.824.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3499bp|location=Sequence derived from alignment at S-firma_F_contig106:52785..56283- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig106:52785..56283- >mRNA_S-firma_F_contig106.824.1 ID=mRNA_S-firma_F_contig106.824.1|Name=mRNA_S-firma_F_contig106.824.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1998bp|location=Sequence derived from alignment at S-firma_F_contig106:52785..56283- (Sphaerotrichia firma ET2_F female)back to top |