prot_S-firma_F_contig10512.719.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10512.719.1
Unique Nameprot_S-firma_F_contig10512.719.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length123
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10512.719.1 vs. uniprot
Match: A0A6H5K1Q4_9PHAE (Protein xylosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q4_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.300e-50
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 0 
Query:    1 MSLVGACLDLLGEAKGYGSPAIAFKCHNRWNQFFSFGEGPLEGHLLSTVPSHLTMADDLAGGELCLEGVDEGARGIVLKTAECSPDRSAQKFNAVQMEPP 100
            MSLVG+CLDLLGEAKGYG+PAIA+KCHNRWNQFFSFGEG LEGHLLS VP HL MADDL  G LCLE VDEG+ GIV+KTAECSPDR AQKF+ VQ++PP
Sbjct:  412 MSLVGSCLDLLGEAKGYGAPAIAYKCHNRWNQFFSFGEGELEGHLLSIVPRHLHMADDLTEGALCLESVDEGSGGIVIKTAECSPDRPAQKFSLVQVQPP 511
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10512.719.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Q4_9PHAE2.300e-5081.00Protein xylosyltransferase n=1 Tax=Ectocarpus sp. ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.80.10.50coord: 2..100
e-value: 4.4E-6
score: 28.6
IPR035992Ricin B-like lectinsSUPERFAMILY50370Ricin B-like lectinscoord: 5..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10512contigS-firma_F_contig10512:955..3216 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10512.719.1mRNA_S-firma_F_contig10512.719.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10512 53..4016 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10512.719.1 ID=prot_S-firma_F_contig10512.719.1|Name=mRNA_S-firma_F_contig10512.719.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
MSLVGACLDLLGEAKGYGSPAIAFKCHNRWNQFFSFGEGPLEGHLLSTVP
SHLTMADDLAGGELCLEGVDEGARGIVLKTAECSPDRSAQKFNAVQMEPP
PRPAPKPKIKIKKPTAPTSDEL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035992Ricin_B-like_lectins