mRNA_S-firma_F_contig10510.716.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10510.716.1
Unique NamemRNA_S-firma_F_contig10510.716.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10510.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10510contigS-firma_F_contig10510:4459..5147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size689
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10510.716.1prot_S-firma_F_contig10510.716.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10510 4674..5123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.9009843-UTR-S-firma_F_contig10510:4458..46731622815586.9009843-UTR-S-firma_F_contig10510:4458..4673Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10510 4459..4673 +
1696949436.056109-UTR-S-firma_F_contig10510:4458..46731696949436.056109-UTR-S-firma_F_contig10510:4458..4673Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10510 4459..4673 +
1622815586.9382539-UTR-S-firma_F_contig10510:5123..51471622815586.9382539-UTR-S-firma_F_contig10510:5123..5147Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10510 5124..5147 +
1696949436.0745983-UTR-S-firma_F_contig10510:5123..51471696949436.0745983-UTR-S-firma_F_contig10510:5123..5147Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10510 5124..5147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.920307-CDS-S-firma_F_contig10510:4673..51231622815586.920307-CDS-S-firma_F_contig10510:4673..5123Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 4674..5123 +
1696949436.0654225-CDS-S-firma_F_contig10510:4673..51231696949436.0654225-CDS-S-firma_F_contig10510:4673..5123Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10510 4674..5123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10510.716.1

>prot_S-firma_F_contig10510.716.1 ID=prot_S-firma_F_contig10510.716.1|Name=mRNA_S-firma_F_contig10510.716.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=150bp
MIFFIFMFYFSFSPIGVSVNCSTGPHPPLRLARRPTRGHTGGGGWTDMTG
DRCATAVRAVGTGVSYNTSCVFFSKTKRAWLASIPSHPIPARAASLPEAS
PRPPSPLLSTCLTGPFFTRVLTFVIRPTCLSTPSLTWGLTGLSVNNFFT*
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mRNA from alignment at S-firma_F_contig10510:4459..5147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10510.716.1 ID=mRNA_S-firma_F_contig10510.716.1|Name=mRNA_S-firma_F_contig10510.716.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=689bp|location=Sequence derived from alignment at S-firma_F_contig10510:4459..5147+ (Sphaerotrichia firma ET2_F female)
CGCACTCGCAAAAACATAGACGACGCCGTCACGACAACTTAGCCAACAAA
GGGGGGCGACAGCAGCACACCACTCATCACTCTTAACCGTGCGCCTGGTC
CAATGCGCTGGAATTCCAGACTGCACACAAGAAACAAAGTAGTTGCGAGC
ATGAGCTGACGGAAACCACCGGAGACAACAATACGCGCTACAGGACGGAG
AACGTGGCGAGGCATATGATATTTTTTATTTTTATGTTTTATTTTTCTTT
TTCTCCCATTGGTGTTTCTGTCAACTGCTCCACTGGCCCCCATCCTCCGC
TACGACTAGCTAGACGACCCACCCGGGGTCACACAGGAGGGGGGGGTTGG
ACCGATATGACAGGGGACAGATGTGCTACTGCCGTACGTGCCGTTGGGAC
GGGGGTTTCCTACAACACATCGTGCGTTTTTTTTTCCAAAACAAAACGCG
CTTGGCTGGCATCCATCCCATCCCATCCCATCCCAGCCCGCGCCGCTTCC
CTACCCGAGGCTTCACCACGTCCACCTTCTCCTCTCCTCTCCACCTGCCT
CACCGGACCGTTCTTTACCCGGGTCTTGACCTTCGTGATCCGCCCCACCT
GCCTCAGTACACCCTCCCTGACCTGGGGCTTGACTGGCCTCAGCGTAAAC
AATTTTTTTACCTAAAGAGTATACATGTTGCTGGCATCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10510:4459..5147+

>mRNA_S-firma_F_contig10510.716.1 ID=mRNA_S-firma_F_contig10510.716.1|Name=mRNA_S-firma_F_contig10510.716.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=900bp|location=Sequence derived from alignment at S-firma_F_contig10510:4459..5147+ (Sphaerotrichia firma ET2_F female)
ATGATATTTTTTATTTTTATGTTTTATTTTTCTTTTTCTCCCATTGGTGT
TTCTGTCAACTGCTCCACTGGCCCCCATCCTCCGCTACGACTAGCTAGAC
GACCCACCCGGGGTCACACAGGAGGGGGGGGTTGGACCGATATGACAGGG
GACAGATGTGCTACTGCCGTACGTGCCGTTGGGACGGGGGTTTCCTACAA
CACATCGTGCGTTTTTTTTTCCAAAACAAAACGCGCTTGGCTGGCATCCA
TCCCATCCCATCCCATCCCAGCCCGCGCCGCTTCCCTACCCGAGGCTTCA
CCACGTCCACCTTCTCCTCTCCTCTCCACCTGCCTCACCGGACCGTTCTT
TACCCGGGTCTTGACCTTCGTGATCCGCCCCACCTGCCTCAGTACACCCT
CCCTGACCTGGGGCTTGACTGGCCTCAGCGTAAACAATTTTTTTACCTAA
ATGATATTTTTTATTTTTATGTTTTATTTTTCTTTTTCTCCCATTGGTGT
TTCTGTCAACTGCTCCACTGGCCCCCATCCTCCGCTACGACTAGCTAGAC
GACCCACCCGGGGTCACACAGGAGGGGGGGGTTGGACCGATATGACAGGG
GACAGATGTGCTACTGCCGTACGTGCCGTTGGGACGGGGGTTTCCTACAA
CACATCGTGCGTTTTTTTTTCCAAAACAAAACGCGCTTGGCTGGCATCCA
TCCCATCCCATCCCATCCCAGCCCGCGCCGCTTCCCTACCCGAGGCTTCA
CCACGTCCACCTTCTCCTCTCCTCTCCACCTGCCTCACCGGACCGTTCTT
TACCCGGGTCTTGACCTTCGTGATCCGCCCCACCTGCCTCAGTACACCCT
CCCTGACCTGGGGCTTGACTGGCCTCAGCGTAAACAATTTTTTTACCTAA
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