mRNA_S-firma_F_contig1050.706.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1050.706.1
Unique NamemRNA_S-firma_F_contig1050.706.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1050.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1050contigS-firma_F_contig1050:23617..26072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2456
Cds size1461
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1050.706.1prot_S-firma_F_contig1050.706.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1050 23840..25300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.7347176-UTR-S-firma_F_contig1050:23616..238391622815585.7347176-UTR-S-firma_F_contig1050:23616..23839Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1050 23617..23839 +
1696949435.1233644-UTR-S-firma_F_contig1050:23616..238391696949435.1233644-UTR-S-firma_F_contig1050:23616..23839Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1050 23617..23839 +
1622815585.7546196-UTR-S-firma_F_contig1050:25300..260721622815585.7546196-UTR-S-firma_F_contig1050:25300..26072Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1050 25301..26072 +
1696949435.1442163-UTR-S-firma_F_contig1050:25300..260721696949435.1442163-UTR-S-firma_F_contig1050:25300..26072Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1050 25301..26072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.744715-CDS-S-firma_F_contig1050:23839..253001622815585.744715-CDS-S-firma_F_contig1050:23839..25300Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1050 23840..25300 +
1696949435.132723-CDS-S-firma_F_contig1050:23839..253001696949435.132723-CDS-S-firma_F_contig1050:23839..25300Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1050 23840..25300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1050.706.1

>prot_S-firma_F_contig1050.706.1 ID=prot_S-firma_F_contig1050.706.1|Name=mRNA_S-firma_F_contig1050.706.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=487bp
MPILCSRRGCSTIGHYGEEGTRKRLFCAGHATEGMVDLKNNCRRKCAHQG
CTKRPSFGVAGSTKREFCAGHAEEGMVNLISKRCAHQGCTQEPSFGVAGS
TKREFCAGHATEGMVNLISKRCAHQGCTKQPSFGVAGSTKREFCAGHAEE
GMVNLISKRCAHQGCTKEPSFGVAGSTKREFCAGHATEDMIDLNRKKCAH
QGCTKQPSFGIAGTKKREFCSGHAKDGMVNLNRKLDGCSSTTAISSSSTP
PTSSGLPSTLPTAASGSSSSSSSGSGSAARRPPSNRQRKSDTPIPRSNRR
SAATGKGRLEDAVQSSSQAGQSRLSMATPADQDQDQDQDQDQGTGVVQDP
AVVAESYSPSQDHCEEDGDEDEDEFITTCAAVKTEEEVVLSSGVVVSDGI
ARRDSDSHRREGKRRGRALPFSRQTSSTAGGDASWGRSSRRGRSKRARAA
GDDDDVVVLEAGDEGGAGGASGGGPAGARIVIKPER*
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mRNA from alignment at S-firma_F_contig1050:23617..26072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1050.706.1 ID=mRNA_S-firma_F_contig1050.706.1|Name=mRNA_S-firma_F_contig1050.706.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2456bp|location=Sequence derived from alignment at S-firma_F_contig1050:23617..26072+ (Sphaerotrichia firma ET2_F female)
AGCCTTGGCCTACTGTACTTGTATGGACAATGACATATATAACGCTATAT
ATATGTCATTGTCCATAGGCCTTGGCTAGCCGCAAAAAAAGAGCGATTTG
TGTGTAACACAGTCTCCTCTCTGATCCCCAAACTCCCCTCAATTGGTACT
CTTTGGCAACCCTGGTGCTCGTGCTTCGGTGGTTTGGGCTTGAACGACGA
TCTCGCACATCAAGGCCAACAACATGCCGATACTTTGTTCGCGTCGAGGT
TGTTCGACGATAGGGCATTATGGGGAGGAAGGTACAAGGAAACGGCTCTT
CTGCGCCGGACATGCCACGGAAGGCATGGTTGATCTCAAGAACAACTGCA
GGAGGAAGTGCGCACATCAGGGCTGCACCAAGCGGCCGTCGTTTGGCGTA
GCGGGGAGCACGAAGCGAGAGTTCTGCGCCGGGCATGCCGAGGAAGGCAT
GGTTAACCTCATCAGCAAGAGGTGCGCACATCAGGGCTGCACACAGGAGC
CGTCGTTTGGCGTAGCGGGAAGCACGAAGCGAGAGTTTTGCGCCGGGCAT
GCCACGGAAGGCATGGTTAACCTCATCAGCAAGAGGTGCGCACATCAGGG
CTGCACCAAGCAGCCGTCGTTTGGCGTAGCGGGAAGCACGAAGCGAGAGT
TCTGCGCCGGACATGCCGAGGAAGGCATGGTTAACCTCATCAGCAAGAGG
TGCGCACATCAGGGCTGCACCAAGGAGCCGTCGTTTGGCGTAGCGGGAAG
CACGAAGCGAGAGTTTTGCGCCGGGCATGCCACGGAAGACATGATTGACC
TCAACAGGAAGAAGTGCGCACACCAGGGCTGCACCAAGCAGCCGTCGTTT
GGCATAGCGGGGACCAAGAAACGAGAGTTCTGCAGTGGACACGCAAAGGA
CGGTATGGTGAACTTGAACCGCAAGCTTGACGGATGCAGTAGCACGACCG
CCATAAGTAGCTCCTCAACCCCACCGACAAGCTCGGGCCTGCCATCGACA
CTGCCCACAGCAGCAAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGG
TAGTGCAGCGCGCCGCCCCCCATCAAATCGACAGCGGAAATCCGACACTC
CCATCCCGCGCTCGAACAGACGCAGCGCTGCGACCGGGAAGGGCAGATTG
GAGGATGCCGTTCAGAGCAGTAGCCAAGCCGGACAGTCTCGTCTTTCGAT
GGCGACCCCGGCAGATCAAGACCAAGATCAAGATCAAGATCAAGATCAAG
GGACAGGGGTAGTCCAAGATCCAGCCGTCGTGGCGGAGAGCTACTCGCCT
TCTCAGGATCACTGTGAAGAGGATGGCGATGAAGATGAAGATGAGTTCAT
CACTACCTGCGCCGCAGTCAAGACGGAGGAGGAAGTGGTGCTCTCATCTG
GCGTGGTTGTCTCCGATGGCATCGCCAGACGCGATTCTGATAGCCACCGG
CGAGAGGGAAAGCGCAGAGGCCGTGCCCTCCCATTCTCCAGGCAGACAAG
CAGTACTGCTGGTGGTGATGCATCGTGGGGCAGGAGCAGCAGGCGAGGAC
GTAGCAAGAGAGCTCGTGCAGCCGGCGACGACGATGATGTGGTTGTTCTG
GAGGCTGGAGATGAAGGGGGAGCAGGCGGTGCCAGTGGTGGTGGTCCGGC
AGGAGCGAGGATCGTGATCAAGCCTGAACGATGACCTATGCAGGTACAGC
AGTGTGTGTTCGCCGATTGTTGGCGTATTTTGCGTTTCTGGTGATGTCGT
GGCCGTCCGATGACGTGCAGGTTCGAACTCGGTATTGAGTGGGAAACACC
CCTATGTTGACTAGATTGACTAGAGTCCATGTTGATCCACTTCGGCAGGC
TCATGATGCCACATTCCTTGTTCAGCAGCTCGCTCTGATTCTGCCGCCAC
TCCCCAAAATCCGAGGTAGCATGCCTCATTAGCGACGATAGTGTACCCGT
TATGGTACAGCAGTTCAGAGCTTGGGGGGCGAGTAGGGTGCGCTGTCCTC
CCCCACAAAGATCTTGGAGGTTGATGGAATGGGGAAATGAAGAAGGATTT
GCCCCCCCGGTGCACGGTCTTGAAAGGAATGTCCAAAGGGCAAACGGACA
ATGGCACCATGCAAGCAACGAATGGCGCACACTCACAGCTCGTGTCTTGC
GGCATCGTAAGGCAGGCACTTACGTATAGCAGTAGTATGTCAAACCCCGC
GCCAGCTTCGTGATTAAGACAGCCACCTGTTCCGTGACACTCCTTCACTC
CTCTGTATTATTCGAGCGAAGCGAGTTTCTAATCTACACAAAGTTGCTCC
GCGATATACGGCCCGATGAACAAAAAAAGGTTTGTCTGTCTGTACGCTTA
AACTTGATTTTAGACTACTTGACTTGATTTTAGACTTAAGGGGGGTCAGC
AGATCATCAGCGTACCACACCAAACAAAAAAAAATGCGCAGTAGCACACC
GCTCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1050:23617..26072+

>mRNA_S-firma_F_contig1050.706.1 ID=mRNA_S-firma_F_contig1050.706.1|Name=mRNA_S-firma_F_contig1050.706.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2922bp|location=Sequence derived from alignment at S-firma_F_contig1050:23617..26072+ (Sphaerotrichia firma ET2_F female)
ATGCCGATACTTTGTTCGCGTCGAGGTTGTTCGACGATAGGGCATTATGG
GGAGGAAGGTACAAGGAAACGGCTCTTCTGCGCCGGACATGCCACGGAAG
GCATGGTTGATCTCAAGAACAACTGCAGGAGGAAGTGCGCACATCAGGGC
TGCACCAAGCGGCCGTCGTTTGGCGTAGCGGGGAGCACGAAGCGAGAGTT
CTGCGCCGGGCATGCCGAGGAAGGCATGGTTAACCTCATCAGCAAGAGGT
GCGCACATCAGGGCTGCACACAGGAGCCGTCGTTTGGCGTAGCGGGAAGC
ACGAAGCGAGAGTTTTGCGCCGGGCATGCCACGGAAGGCATGGTTAACCT
CATCAGCAAGAGGTGCGCACATCAGGGCTGCACCAAGCAGCCGTCGTTTG
GCGTAGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGGACATGCCGAGGAA
GGCATGGTTAACCTCATCAGCAAGAGGTGCGCACATCAGGGCTGCACCAA
GGAGCCGTCGTTTGGCGTAGCGGGAAGCACGAAGCGAGAGTTTTGCGCCG
GGCATGCCACGGAAGACATGATTGACCTCAACAGGAAGAAGTGCGCACAC
CAGGGCTGCACCAAGCAGCCGTCGTTTGGCATAGCGGGGACCAAGAAACG
AGAGTTCTGCAGTGGACACGCAAAGGACGGTATGGTGAACTTGAACCGCA
AGCTTGACGGATGCAGTAGCACGACCGCCATAAGTAGCTCCTCAACCCCA
CCGACAAGCTCGGGCCTGCCATCGACACTGCCCACAGCAGCAAGCGGCAG
CAGCAGCAGCAGCAGCAGCGGCAGCGGTAGTGCAGCGCGCCGCCCCCCAT
CAAATCGACAGCGGAAATCCGACACTCCCATCCCGCGCTCGAACAGACGC
AGCGCTGCGACCGGGAAGGGCAGATTGGAGGATGCCGTTCAGAGCAGTAG
CCAAGCCGGACAGTCTCGTCTTTCGATGGCGACCCCGGCAGATCAAGACC
AAGATCAAGATCAAGATCAAGATCAAGGGACAGGGGTAGTCCAAGATCCA
GCCGTCGTGGCGGAGAGCTACTCGCCTTCTCAGGATCACTGTGAAGAGGA
TGGCGATGAAGATGAAGATGAGTTCATCACTACCTGCGCCGCAGTCAAGA
CGGAGGAGGAAGTGGTGCTCTCATCTGGCGTGGTTGTCTCCGATGGCATC
GCCAGACGCGATTCTGATAGCCACCGGCGAGAGGGAAAGCGCAGAGGCCG
TGCCCTCCCATTCTCCAGGCAGACAAGCAGTACTGCTGGTGGTGATGCAT
CGTGGGGCAGGAGCAGCAGGCGAGGACGTAGCAAGAGAGCTCGTGCAGCC
GGCGACGACGATGATGTGGTTGTTCTGGAGGCTGGAGATGAAGGGGGAGC
AGGCGGTGCCAGTGGTGGTGGTCCGGCAGGAGCGAGGATCGTGATCAAGC
CTGAACGATGAATGCCGATACTTTGTTCGCGTCGAGGTTGTTCGACGATA
GGGCATTATGGGGAGGAAGGTACAAGGAAACGGCTCTTCTGCGCCGGACA
TGCCACGGAAGGCATGGTTGATCTCAAGAACAACTGCAGGAGGAAGTGCG
CACATCAGGGCTGCACCAAGCGGCCGTCGTTTGGCGTAGCGGGGAGCACG
AAGCGAGAGTTCTGCGCCGGGCATGCCGAGGAAGGCATGGTTAACCTCAT
CAGCAAGAGGTGCGCACATCAGGGCTGCACACAGGAGCCGTCGTTTGGCG
TAGCGGGAAGCACGAAGCGAGAGTTTTGCGCCGGGCATGCCACGGAAGGC
ATGGTTAACCTCATCAGCAAGAGGTGCGCACATCAGGGCTGCACCAAGCA
GCCGTCGTTTGGCGTAGCGGGAAGCACGAAGCGAGAGTTCTGCGCCGGAC
ATGCCGAGGAAGGCATGGTTAACCTCATCAGCAAGAGGTGCGCACATCAG
GGCTGCACCAAGGAGCCGTCGTTTGGCGTAGCGGGAAGCACGAAGCGAGA
GTTTTGCGCCGGGCATGCCACGGAAGACATGATTGACCTCAACAGGAAGA
AGTGCGCACACCAGGGCTGCACCAAGCAGCCGTCGTTTGGCATAGCGGGG
ACCAAGAAACGAGAGTTCTGCAGTGGACACGCAAAGGACGGTATGGTGAA
CTTGAACCGCAAGCTTGACGGATGCAGTAGCACGACCGCCATAAGTAGCT
CCTCAACCCCACCGACAAGCTCGGGCCTGCCATCGACACTGCCCACAGCA
GCAAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGGTAGTGCAGCGCG
CCGCCCCCCATCAAATCGACAGCGGAAATCCGACACTCCCATCCCGCGCT
CGAACAGACGCAGCGCTGCGACCGGGAAGGGCAGATTGGAGGATGCCGTT
CAGAGCAGTAGCCAAGCCGGACAGTCTCGTCTTTCGATGGCGACCCCGGC
AGATCAAGACCAAGATCAAGATCAAGATCAAGATCAAGGGACAGGGGTAG
TCCAAGATCCAGCCGTCGTGGCGGAGAGCTACTCGCCTTCTCAGGATCAC
TGTGAAGAGGATGGCGATGAAGATGAAGATGAGTTCATCACTACCTGCGC
CGCAGTCAAGACGGAGGAGGAAGTGGTGCTCTCATCTGGCGTGGTTGTCT
CCGATGGCATCGCCAGACGCGATTCTGATAGCCACCGGCGAGAGGGAAAG
CGCAGAGGCCGTGCCCTCCCATTCTCCAGGCAGACAAGCAGTACTGCTGG
TGGTGATGCATCGTGGGGCAGGAGCAGCAGGCGAGGACGTAGCAAGAGAG
CTCGTGCAGCCGGCGACGACGATGATGTGGTTGTTCTGGAGGCTGGAGAT
GAAGGGGGAGCAGGCGGTGCCAGTGGTGGTGGTCCGGCAGGAGCGAGGAT
CGTGATCAAGCCTGAACGATGA
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