mRNA_S-firma_F_contig105.700.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig105.700.1
Unique NamemRNA_S-firma_F_contig105.700.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.310e-28
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 2 
Query:    5 NHEGEAASDMIGRWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            N +G  A DMIG  +EEED+L+EDV+RVRELLANAPADRAWRR+GYL++CRA PDR+ + + +TS       +++RR   R + A     G AG S  D  T  +WA VV  V+ LQEEGIFRTI+ Y
Sbjct:  277 NVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPE-RRMTSGT--HYTNVARRTRSRAKMARA--RGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEY 399
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.940e-16
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 2 
Query:   14 GEAASDMIGRWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            G    +++G    E D +  +V RV +LL  AP DRAWRR+G LVLCRAHP+R+   Q+ +         ++R     V    +   G+  G+AAD RT ++W+ +V  V+ L +EGIFRTI+GY
Sbjct:  276 GHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQV-AGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGY 398
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.680e-13
Identity = 58/142 (40.85%), Postives = 76/142 (53.52%), Query Frame = 2 
Query:    2 LNHEGEAASDMIGRWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAH--PDRMQQIQDITSAPA-GMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVV-------VSVVRLQEEG---IFRTILGY 388
            ++  G  A+DM+    EE D L+EDVDRVR+LLA APADRAWRR+G+L+L RAH    R+Q     + APA G+A+        R R+           S   +R   DWAGVV       V  + L  +G   IF  I+GY
Sbjct:  655 VSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAK--------RTRS-----------SEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGY 777
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.800e-12
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   14 GEAASDMIGRWIEEEDQL-SEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            G+  +D +G  +E  D L   +V  V ELLANAPADRAWRR+G LVLCRA   R +  Q+      G     +R  A   R+ A+G     G    +  T  +W      VV L+EEGIFR+++G+
Sbjct:  298 GQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRG--TPEGGTGDEWRSASKRVVELEEEGIFRSVVGF 421
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.230e-11
Identity = 49/144 (34.03%), Postives = 70/144 (48.61%), Query Frame = 2 
Query:    2 LNHEGEAASDMIGRWIEEED-QLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGS--------------AADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            ++ EGE    M+ + I E    +   ++R+  LLA AP DRAWRR+G+LVL R HPDR++   +I  A A       +R   R  T  +  DG  GG               A    T   + GV   ++ L EEG+FR I+G+
Sbjct:  223 MDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVLGRVHPDRVRLAVEIPPAAADATEQPQQRPRRRASTGQVEVDGTNGGGGXTGASSGVRAGIEAVHEGTVAGFGGVSAWMMALTEEGVFRRIVGF 366
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.020e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:   14 GEAASDMIGRWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQD 190
            G  A+D IG  + EED++ E+ + VR+LLANAPADRAWRR+  LVLCRA PD+MQ   D
Sbjct:  299 GMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSD 357
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.180e-10
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 2 
Query:    5 NHEGEAASDMIGRW----IEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            N  G+  +D+IG +    + +ED +  D  R+R +LA APADR+WRR+G+LVL R+ P R+Q    I +  + + R+       RV    +G D       A+ +   DW G+V S++ L+ +G+FR ++G+
Sbjct:  381 NDNGDVPADVIGVYDRGDVNDED-VKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQ----IANKGSRVNRNSCPAKVARVSGEDLGGDEEE----AENQMTVDWGGLVGSLLGLEADGLFRLVVGF 503
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.910e-10
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 2 
Query:    2 LNHEGEAASDMIG-RWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGM 214
            ++ +GE A+D IG R     D   ED +R R LLA APADRAWRR+G LVLCRAHPDR+Q   D+    AG+
Sbjct:  306 VSKQGETAADSIGTRRCHRTDP--EDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQLGGDLAGLVAGV 375
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.480e-10
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 2 
Query:    5 NHEGEAASDMIGRWIEE---EDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            N EG+A +D++G        ++++  D  R+R +LA APADR+WRR+G LVL R+ P R+Q     +S   G +   S+    +V  A+    G       D     DW  +V  ++ L+ +G+FR ++G+
Sbjct:  251 NEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSS---GSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGF 378
[Close]
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-9
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 2 
Query:   86 VRELLANAPADRAWRRQGYLVLCRAHPDRMQQIQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGVVVSVVRLQEEGIFRTILGY 388
            V ELLANAPADRAWRR+G LVLCRA   R +  Q+      G     +R  A   R+ A+G    +G    +  T  +W      VV L EEGIFR+++G+
Sbjct:   54 VHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSG--TPEGGTGDEWRSASRRVVEL-EEGIFRSVVGF 151
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig105.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE8.310e-2853.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G981_ECTSI2.940e-1640.00Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JHY9_9PHAE7.680e-1340.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI3.800e-1239.68Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JU78_9PHAE5.230e-1134.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI1.020e-1059.32Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LB27_ECTSI4.180e-1034.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1U1_ECTSI4.910e-1054.17Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LTL5_ECTSI6.480e-1032.06MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNN1_9PHAE1.590e-942.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig105contigS-firma_F_contig105:33907..36788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G981
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Motile_Sperm
Max annot lvl2759|Eukaryota
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Evalue1.12e-16
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size592
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig105.700.1prot_S-firma_F_contig105.700.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig105 33938..34300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4197836-UTR-S-firma_F_contig105:33906..339371622815585.4197836-UTR-S-firma_F_contig105:33906..33937Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 33907..33937 +
1696949434.904578-UTR-S-firma_F_contig105:33906..339371696949434.904578-UTR-S-firma_F_contig105:33906..33937Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 33907..33937 +
1622815585.446125-UTR-S-firma_F_contig105:34300..343051622815585.446125-UTR-S-firma_F_contig105:34300..34305Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 34301..34305 +
1696949434.9397066-UTR-S-firma_F_contig105:34300..343051696949434.9397066-UTR-S-firma_F_contig105:34300..34305Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 34301..34305 +
1622815585.458337-UTR-S-firma_F_contig105:36595..367881622815585.458337-UTR-S-firma_F_contig105:36595..36788Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 36596..36788 +
1696949434.951152-UTR-S-firma_F_contig105:36595..367881696949434.951152-UTR-S-firma_F_contig105:36595..36788Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig105 36596..36788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4332235-CDS-S-firma_F_contig105:33937..343001622815585.4332235-CDS-S-firma_F_contig105:33937..34300Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 33938..34300 +
1696949434.9268107-CDS-S-firma_F_contig105:33937..343001696949434.9268107-CDS-S-firma_F_contig105:33937..34300Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig105 33938..34300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig105.700.1

>prot_S-firma_F_contig105.700.1 ID=prot_S-firma_F_contig105.700.1|Name=mRNA_S-firma_F_contig105.700.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=121bp
MIGRWIEEEDQLSEDVDRVRELLANAPADRAWRRQGYLVLCRAHPDRMQQ
IQDITSAPAGMARSISRRDAVRVRTAAIGCDGNAGGSAADARTRQDWAGV
VVSVVRLQEEGIFRTILGYP*
back to top

mRNA from alignment at S-firma_F_contig105:33907..36788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig105.700.1 ID=mRNA_S-firma_F_contig105.700.1|Name=mRNA_S-firma_F_contig105.700.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2882bp|location=Sequence derived from alignment at S-firma_F_contig105:33907..36788+ (Sphaerotrichia firma ET2_F female)
CCTCAACCATGAAGGCGAAGCAGCATCGGATATGATCGGTCGGTGGATCG
AAGAAGAAGACCAACTGTCCGAGGACGTCGACCGCGTGCGCGAGCTCTTG
GCCAACGCCCCGGCCGACAGAGCATGGCGTCGCCAGGGCTACCTGGTGTT
GTGCCGCGCTCATCCCGACAGAATGCAGCAGATACAGGACATCACCAGCG
CCCCTGCCGGCATGGCGCGGAGCATTTCTCGTAGAGATGCTGTGCGGGTG
CGAACAGCTGCGATTGGCTGCGATGGGAACGCGGGCGGTAGCGCGGCGGA
TGCACGAACCAGGCAGGACTGGGCCGGTGTGGTGGTGAGCGTGGTAAGAC
TGCAAGAGGAGGGCATATTCCGGACGATCTTGGGATACCCGTGACGCAGG
TGAGATGACATTTGTTTCCGATGTATTTTGCCTAGTAGATACAGAGGAGG
ATGTTGCATTCCGAGCACGAGAGTTCCATACAATGATTGTGGAGTAGTAA
TATCCACAGAAGTATAATCCGTCGCACTACTTGAAAGTAGTAGGCTGCGT
TGTTTGTTTTTTGCGCACGCCGCACACGTTCGTGTGAGACTGAATCCGAT
AGCCTTGGGGTGACCCCAGCCACCAAAACTATTGACCAATCGAACACGTA
CTCTCACGCTTGAGCATTGGTCGTGACCGGATGATTGTGGCTAGGGCGTT
CTAGACAGACATGCGGTATTGTGAGGCATCTTGAGCAGTAGCACGACTAC
GAACGCAGAGCAGCATACACATATTTTGTGGCGTGTATACGCTACCGATC
AGTGTGGGCCTTGGCTCAAACACGTCTCGTATGTTTGGTGTCGTCATGTC
GCGTCTCGTCTTGACGAGTTCGCGAGTCTGGGGCGTGGTCAATCCGTGAA
AAACGCTTGAAACCCACGTGTGTTGTGCACGGAAAACATCTGTCTCCACA
ATGCAAACAGCAGATAACACCCTCAACATGTATTAGATGGGTTGTGCATG
AGGTCACCACACGATTCCAGGACGTCATGAACCCGACCATACGGGTAGGG
GCGGTCTTCAAGCCGTGAAGCACACACACGCAAGTGAAAAGCACCGTTTG
CAGCAGCACTGCCGTATGTAGCTTCCTCTGCTGCATCAACAGCAGCACGA
CAACAACGTAGCGTCTATTTCTATCAACAACGGCACCAAAGGGTTAGCAA
CTTGCCGCCTCAATAGGAGCTATCACCACCTAACTGCTTGTCTTTTCACA
TCAAGTTCGCTGAACGAAGTGCACGACCCAATGATATTAACTCGAAAATA
ATTCAACTGTCGAAATTTCCAACATTGTTGTACGAGGAACGATACAGATA
CCTACAGTAGTCTACAGGACCACGTTTGGCCTACACGGCACCGGTGGTGT
CTCCCCTTATGGCCTTTTTGAATCGCGTGCGATTCAGGCTTCCCGGCCCA
CTGGAAGCGGCGAGCCTTCCCTAGTTACTTATTAGGTGACACATGGAGGC
CGTTGCATATTCTGCAGGTAGATGACTCCCAAGCTGGTGTCTTGACTCCC
TGCACGCACAGCTGCGGTGAGTGGTAGACCCGTGAAGAAACTCAACTGGC
TGACTTCCCGCTACTGGACGCTGCAACAGGGTGTAGTACCCACACCCACT
TCCACTCCCTCGCATGCCTTTTCAAAAACCGAGGCGTCGAGACCACTCGC
CATCGGCGGTGATGGCCGAAACTTAGTATCTACCTTTTCTTGGATGTGTA
GTTCCCCCCCCGTGGTCCCTACTGCAATCTTCTGCCTTCTTGCCTGGCAA
AGCTTTGCACGATACCACTGGCATCGCATTCGGGCCCACCACCTCATACC
CTTCCTCCCGCCCTAGTTGACGCCCAGGTCATTCCTCCCCTCATACTTTC
TTCGGCCGCGGCGAGTTGCACAAGAATTCCGACGCGCTTGGCCTTTTTAC
GGATACCTGTCTACACGGCGATTGTAGCATTCGCGCATACGCCTATTGTC
GTCGTCCAGGGCGTGTGTTGCGTCTAGAAGCAACAGTAGTAGTTGTGTTC
GTCGTTTACAGTCTATTTTTCCTCTGACCCTCTTCCCACACTCGCGCGAG
GTTTTCCCGCGCCACCCACGCCAGTTCCCTTTCTTGGATTCTGTGAGGAC
CAGCGAGAACGGCGGTGTGGCGCGAATCGTGTGTCCCCACTGATTGAAGG
CTGCATTCATTTCGCGCATCTGTTTGATGTACACCTGTTCGCAGCAGCAC
GTGTCTCCTCATCCCGCGACACTACAATGCCTCTTCCACGAAGATACTTG
TCGGCGTACTCGCGCTAAACCCAGCTCGGAAAGAAAAGACAACCGTTCTC
CCAGCTCCAGAGAGTCGAGATGGGTGTGTCGTGGTTCAGGCTCCAACCCT
TGTTCCACCGCTGAAGATCAATTTCCGTTTTCGTTTTCGCTTTTATTTCA
TCACAGGCGAACAGGGCTCATGAGCTCGTTTTTTTTTTTTTATCAAGTTG
CCGTGATGCTGTCTTTGTGTTTCTTTTTGGCACCTCAAGACTGGTTGTCG
TACCGCGAAGAGCAATGTCTACGGTAGCGCCAGGTCTTGAGGGGTGTGTT
TGGAGTGTCCAATGCTTTCCCTCGAGAAGTAACAAGTCAGCCCTAACGTA
CCTCCATGCCCCACCTTGTGTCATCCTTTCCAACGGCAGGGGATAAGCTT
CAGAACATTTCGAAAGATCACGGCTCGGAGGGTCGTGATGCATGCGGGAT
GGATTTATGGACCTTGGTTGGCGGGCAGTTTATCTGATTCCGCCGTTGAT
GATGTATCAATTGAGTTCATGACAATGGTGGTGTTCAAAAGATTGCGTAG
ACAAACTACAGGAAAGTACAATAACAAATATG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig105:33907..36788+

>mRNA_S-firma_F_contig105.700.1 ID=mRNA_S-firma_F_contig105.700.1|Name=mRNA_S-firma_F_contig105.700.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=726bp|location=Sequence derived from alignment at S-firma_F_contig105:33907..36788+ (Sphaerotrichia firma ET2_F female)
ATGATCGGTCGGTGGATCGAAGAAGAAGACCAACTGTCCGAGGACGTCGA
CCGCGTGCGCGAGCTCTTGGCCAACGCCCCGGCCGACAGAGCATGGCGTC
GCCAGGGCTACCTGGTGTTGTGCCGCGCTCATCCCGACAGAATGCAGCAG
ATACAGGACATCACCAGCGCCCCTGCCGGCATGGCGCGGAGCATTTCTCG
TAGAGATGCTGTGCGGGTGCGAACAGCTGCGATTGGCTGCGATGGGAACG
CGGGCGGTAGCGCGGCGGATGCACGAACCAGGCAGGACTGGGCCGGTGTG
GTGGTGAGCGTGGTAAGACTGCAAGAGGAGGGCATATTCCGGACGATCTT
GGGATACCCGTGAATGATCGGTCGGTGGATCGAAGAAGAAGACCAACTGT
CCGAGGACGTCGACCGCGTGCGCGAGCTCTTGGCCAACGCCCCGGCCGAC
AGAGCATGGCGTCGCCAGGGCTACCTGGTGTTGTGCCGCGCTCATCCCGA
CAGAATGCAGCAGATACAGGACATCACCAGCGCCCCTGCCGGCATGGCGC
GGAGCATTTCTCGTAGAGATGCTGTGCGGGTGCGAACAGCTGCGATTGGC
TGCGATGGGAACGCGGGCGGTAGCGCGGCGGATGCACGAACCAGGCAGGA
CTGGGCCGGTGTGGTGGTGAGCGTGGTAAGACTGCAAGAGGAGGGCATAT
TCCGGACGATCTTGGGATACCCGTGA
back to top