mRNA_S-firma_F_contig10474.666.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10474.666.1
Unique NamemRNA_S-firma_F_contig10474.666.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A5D6Z1C9_9STRA (DUF676 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Z1C9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.730e-30
Identity = 113/326 (34.66%), Postives = 167/326 (51.23%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILVAR--ANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG--FYGRTGADLMLAPRTPAAAGAG---ADVGTPVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKPPLFG-WRSKPTSWHV--ATLEGWPAEAPARHLLPHVREP--SGARATRARSSDTAGSSSKLVT------DARREVEFSPAVFEALS-GLQWRRVDI 900
            VHG NG  +D+++    +   F  A++L+ +  AN   T  GV  GG RLA E+  A    +      ++   IVGHSLGGLYAR+A       PL    +P +V  +VS++++ +PHLGS RP   S  K++WR  VH VL     YG+TG DL++  +  A        AD+  P+L  MC  D  FI AL+ F   TLVAMTD D+ VP+A ASIR  +P+ + P    F  WR     WH+  +  E   + + +  LL  + +         + R      +S +  +      D ++EVEFS  + E+L   + WRR+D+
Sbjct:   54 VHGNNGAPADFDAVEAALLRKFGPAQVLIIKSAANHTQTSLGVEVGGARLAEEVYRAVFEYELHPDADVYKLSIVGHSLGGLYARFAI-----VPLIEKLSPLNV-DYVSFVTICTPHLGSRRPRSESALKNVWRMGVHSVLGSRTIYGQTGIDLLVDNKRFADEQTDNDTADLPPPLLEAMCSPDSAFIKALQRFRFGTLVAMTDGDVVVPYASASIRNFNPYPSVPLTERFPEWR-----WHIHHSGFEDDTSSSSSAVLLQLLDDKVDKTVEVEQLRVGVDVSASPRYTSVEGYDADNKQEVEFSYTMIESLQQAVPWRRIDV 368          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: K3WHW0_GLOUD (DUF676 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHW0_GLOUD)

HSP 1 Score: 119 bits (297), Expect = 1.820e-26
Identity = 91/244 (37.30%), Postives = 128/244 (52.46%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPV--KEAFPGARILVARANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSN--PLTAPGAPGSVLHWVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLY--GFYGRTGADLMLAPRTPAAAGAGADVGTPVLLRMC--EGDFIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKPPLFG-WRSKPTSWHV 690
            VHG NG  +D+++    +  K  F    I+ ++ N   T  GV  GG RLA+E+       +       + F I+ HSLGGLYAR+A   L  +  PL         + +VS++++ +PHLGS RP G S  K++WR  VH VL     YGRTG DL++   +    G+      P+L  M   E +++ AL+ F   TLVAMTD DM VP+A ASIR  +P+ +A     F  WR     WHV
Sbjct:   30 VHGNNGAPTDFDAIESALVKKYGFDDILIIKSKVNHTQTSLGVEVGGSRLASEVYQEVFQHELHPDINSYKFSIIAHSLGGLYARFALVQLMESLSPLD--------IQYVSFVTICTPHLGSRRPRGDSTLKNVWRMGVHTVLATNALYGRTGVDLLIDSSSDDDNGSPVP---PILETMTNPEFEYLNALKRFRSGTLVAMTDGDMLVPYASASIRNFNPYPSAMLTDKFTEWR-----WHV 257          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A024UBV3_9STRA (DUF676 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBV3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.280e-25
Identity = 101/314 (32.17%), Postives = 143/314 (45.54%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAF-PGARILVARANEGATRHGVVEGGERLAAEILDACKSL--------DGLHSFVI--VGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVSYMSLASPHLGSLRPTGSVAKSLWRRAVHGVLYG--FYGRTGADLMLAPRTPAAAGAGADVGTPVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKPPLFGWRSKPTSWHVATLEGWPAEAPARHLLPHVREPSGARATRARSSDTAGSSSKLVTDARREVEFSPAVFEALSGLQWRRVDI 900
            VHG+ G A D +     +   F   A +  + AN   T  G+   G  LA E+LD   +         DG     I  VGHSLGG+ +RYA   L              +H  S+ +L +PHLGS RP G+V + LW+ AVHG++     YG+TG +L+              V  P+L  M + D  F+ AL+AF+HRT VAM   D  VP+A A+I+A   H   P   L G  +    W +A   G+         L H    S      A S  T+  +S ++ D R EV  S  +   L+ + WRR+ +
Sbjct:   72 VHGIYGKAQDSDLIAAALTREFGSSALVYQSTANTHKTHMGIRAMGTNLAIELLDLFHNHCLPELPPHDGEPPMRISFVGHSLGGIISRYAVVYLQVA------FQAYHIHPTSFSTLCTPHLGSRRPDGTVGQQLWKSAVHGIMSVSLIYGQTGVELLCEDH----------VKEPLLEAMSKRDSVFMKALKAFDHRTAVAMIQGDHIVPYASAAIQA---HVTHPCRDLLGPSNCSWQWTLAH-SGFSEPTSKFTTLLHATYGSTRCEVNASSLSTSSPASNVIVDERGEVSISTTMLAGLNSISWRRLHV 365          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A3M6VIJ4_9STRA (DUF676 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIJ4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.740e-25
Identity = 85/226 (37.61%), Postives = 122/226 (53.98%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILV--ARANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLH--WVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG--FYGRTGADLMLAPRTPAAAGAGADVGTPV--LLRMC---EGDFIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPH 630
            VHG NG A+D+++    +   F   ++L+  AR+NE  T  GV  GG RLA E+++     D       +   +VGHSLGGLYARYA   +            S LH  ++ ++++ +PHLGS R  G S  K++ R  VH VL    FYGRTG DL+L  +        AD   P   LL +    +  F+ +L+ F+H TLVAMTD D+ VP+  AS+R + P+
Sbjct:   23 VHGNNGSAADFDAMETSLLTKFGERQMLIIKARSNELDTSLGVDIGGARLAKEVVETVFEYDLCPIVTKYKLSVVGHSLGGLYARYALVSIMDAL--------SCLHVEYIDFVTICTPHLGSRRARGPSTMKNILRLGVHKVLASQIFYGRTGIDLLLNVQEQQEGVTDADAAEPARPLLEVMSNPDSRFVRSLKRFQHGTLVAMTDGDVVVPYPSASMRNNSPY 240          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A8J5JAM7_9STRA (DUF676 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAM7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.900e-25
Identity = 87/227 (38.33%), Postives = 125/227 (55.07%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILV--ARANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLH--WVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG-FYGRTGADLMLAPRTPAAAGAGADVGT-----PVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPH 630
            VHG NG A+D+++    +   F   ++L+  ++ANE  T  GV  GG RLA E+++A    D       +   ++GHSLGGLYARYA  +   N L       S LH  +V ++++ +PHLGS R  G S  K++ R  VH VL    YG+TG DL+L  +     G   D  T     P+L  M + D  F+ +LR F + TLVAMTD D+ VP+  AS+R+  P+
Sbjct:   57 VHGNNGSAADFDAVEAALLTKFGNRQMLIIKSKANEQDTSLGVEIGGTRLAKEVVEAVFEYDLSPAVSSYKLSVIGHSLGGLYARYAL-VQIMNTL-------SCLHVEYVDFVTICTPHLGSRRARGPSTMKNILRLGVHKVLASSIYGQTGIDLLLDAQEQQQEGV-TDAETVVSPRPLLEVMSDPDSEFVRSLRRFRNGTLVAMTDGDVVVPYPSASMRSHSPY 274          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A8J5XEJ2_DIALT (DUF676 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XEJ2_DIALT)

HSP 1 Score: 114 bits (284), Expect = 1.010e-24
Identity = 91/260 (35.00%), Postives = 126/260 (48.46%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILVARANEGATR--HGVVEGGERLAAEILDACKSLDGLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVSYMSLASPHLGSLRPTGSVAKSLWRRAVHGVLYGFYG-----RTGADLMLAPRTPAAAGAGADVGTPVLLRMCEGDFIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKP----PLFGWRSKPTSWHVATLEGWP-AEAPARHLLPHV 747
            VHG+ G ASD N +L  +  A P   +L  R NE   +   G+V GGERL A IL+A  +L  L    ++GHSLGGLY RYA G+LY       G  G  L   S ++LA+PHLG  RP G   + L R      L+         + G +L L            D   P+LL++C+G ++ ALR F    L A   +D  VP+  ASI+  +P+    +P    PL+   +  + + +A   G P A A A    PH 
Sbjct:   21 VHGVAGLASDLN-YLNSLLSARPQLVVLAPRCNEPLLKPFEGIVAGGERLVACILEAIAALPSLRKLSLIGHSLGGLYIRYAAGILY-------GRCGCTLEPASLITLATPHLGVRRPLG---RPLMRGGGFNGLFNLVAERLCSQLGLELTLED----------DADEPLLLQLCKGPYLHALRRFGACWLYANVFNDFLVPYCTASIQPYNPYRRGEQPLTVSPLYPHITLASLYRLALRLGQPPAPAIAPTFFPHA 259          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A6A3FSK9_9STRA (DUF676 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FSK9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.420e-24
Identity = 84/228 (36.84%), Postives = 123/228 (53.95%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILV--ARANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLH--WVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG--FYGRTGADLMLAPRTPAAAGAGADVGT-----PVLLRMC--EGDFIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPH 630
            VHG NG A+D+++    ++  F   ++L+  +RANE  T  GV  GG RLA E+++     +       +   ++GHSLGGLYARYA  +   N L       S LH  +V ++++ +PHLGS R  G S  K++ R  VH VL     YG+TG DL+L  +         D        P+L  M   E +F+ +L+ F H TLVAMTD D+ VP+  AS+R+  P+
Sbjct:   53 VHGNNGSAADFDAVEAALQAKFGERQMLIIKSRANEPDTSLGVEIGGTRLAKEVVETVFEYELSPVVSSYKLSVIGHSLGGLYARYAV-VQIMNAL-------SCLHVEYVDFVTICTPHLGSRRARGPSTVKNILRLGVHKVLSSRSIYGQTGIDLLLDAQAQQQQEGVTDADAVEPARPLLEVMSDPESEFVRSLKRFRHGTLVAMTDGDVVVPYPSASMRSYSPY 272          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A0W8CRX7_PHYNI (DUF676 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CRX7_PHYNI)

HSP 1 Score: 112 bits (280), Expect = 2.430e-24
Identity = 85/226 (37.61%), Postives = 124/226 (54.87%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILV--ARANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSV-LHWVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG-FYGRTGADLMLAPRTPAAAGAGADVGT-----PVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPH 630
            VHG NG A+D+++    V   +   ++L+  ++AN   T  GV  GG RLA E+++A    D       + F ++GHSLGGLYARYA   +         A G + + +V ++++ +PHLGS R  G S  K++ R  VH VL    YG+TG DL+L  +     G   D  T     P+L  M + D  F+ +LR F + TLVAMTD D+ VP+  ASIR+  P+
Sbjct:   57 VHGNNGSAADFDAVETAVLSKYGNRQVLIIKSKANAQDTSLGVEIGGTRLAKEVVEAVFEYDLSPAVTSYKFSMIGHSLGGLYARYALVQIMD-------ALGCLHVEYVDFVTICTPHLGSRRARGPSTMKNILRLGVHKVLASSIYGQTGIDLLLDAQEQQQEGV-TDADTVVPPRPLLEVMSDPDSEFVRSLRRFRNGTLVAMTDGDVVVPYPSASIRSHSPY 274          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: W4FYU1_9STRA (DUF676 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FYU1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.050e-22
Identity = 104/322 (32.30%), Postives = 148/322 (45.96%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAF-PGARILVARANEGATRHGVVEGGERLAAEILDACKSL---------------DGLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVSYMSLASPHLGSLRPTGSVAKSLWRRAVHGVLYG--FYGRTGADLMLAPRTPAAAGAGADVGTPVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKPPLF-GWRSKPTSWHVATLEGWPAEAPARHLLPHVREPSGARATRARSS--DTAGSSSKLVTDARREVEFSPAVFEALSGLQWRRVDI 900
            VHG+ G  SD +     +   F   A++L + AN   T  GV   G  LA E+LD   S                DG      +GHSLGG+ ARYA   L +  +     P       S+ +L +PHLGS RP GS+ K LW+ AVH ++     YG+TG +L+                TP+L  M + D  F+AAL+AF+HRT VAM   D  VP A A+I+   P    P+P    GW+     W VA   G+  E         +   +G+ +  + SS      +SS+ + D R +V  S  +   L+ + WRRV +
Sbjct:   71 VHGIYGKPSDSDHIAAALTRTFGESAKVLQSAANTHKTHLGVRLMGTNLAIEVLDMLHSHQTHPGKDVPTNERRGDGTR-LSFIGHSLGGIVARYAIVYLQAALIAYGIQP------TSFTTLCTPHLGSRRPGGSLGKELWKSAVHSLMSVSFIYGQTGMELLCQDHND----------TPLLELMSKPDSVFMAALKAFDHRTAVAMLQGDYIVPRASAAIQPHMP--TLPRPSNHPGWQ-----WSVA-YSGFADE---------LDTTTGSTSPTSSSSFPPPLDASSRWMADDRDQVAISLDILTGLNTVMWRRVHV 358          
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Match: A0A421F5R4_9STRA (DUF676 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F5R4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.060e-22
Identity = 85/245 (34.69%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    4 VHGMNGFASDWNSFLGPVKEAFPGARILVAR--ANEGATRHGVVEGGERLAAEILDACKSLD-----GLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVSYMSLASPHLGSLRPTG-SVAKSLWRRAVHGVLYG--FYGRTGADLMLAPR--TPAAAGAGADVGT--PVLLRMCEGD--FIAALRAFEHRTLVAMTDHDMSVPFAGASIRADDPHGAAPKPPLFGWRSKPTSWHV 690
            VHG NG  +D+++    +   +   ++L+ +  ANE  T  GV  GG RLA E+++A  + D       +   ++GHSLGGLYARYA   +  +           + +V ++++ +PHLGS R  G S  K++ R  VH VL     YG TG DL+L  +  T       +DV    P+L  M   D  FI +LR F + TLVAMTD D+ VP+  AS+R+  P+ +         R     WHV
Sbjct:   14 VHGNNGSPADFDAVEDALLTKYGENQMLIIKSSANEPDTSLGVEVGGTRLAKEVVEAVFAYDLSPVADTYKLSVIGHSLGGLYARYAIVQMMQSLSCLN------MEYVDFVTICTPHLGSRRARGPSTVKNILRLGVHKVLASRAIYGLTGIDLLLDAQGQTQERTSDTSDVEPVRPLLEVMGNDDSEFIRSLRRFRNGTLVAMTDGDVVVPYPSASMRSHSPYVST----FLSERYMDWRWHV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10474.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Z1C9_9STRA4.730e-3034.66DUF676 domain-containing protein n=1 Tax=Pythium b... [more]
K3WHW0_GLOUD1.820e-2637.30DUF676 domain-containing protein n=1 Tax=Globispor... [more]
A0A024UBV3_9STRA1.280e-2532.17DUF676 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A3M6VIJ4_9STRA1.740e-2537.61DUF676 domain-containing protein n=2 Tax=Peronospo... [more]
A0A8J5JAM7_9STRA6.900e-2538.33DUF676 domain-containing protein n=1 Tax=Phytophth... [more]
A0A8J5XEJ2_DIALT1.010e-2435.00DUF676 domain-containing protein n=2 Tax=Diacronem... [more]
A0A6A3FSK9_9STRA2.420e-2436.84DUF676 domain-containing protein n=3 Tax=Phytophth... [more]
A0A0W8CRX7_PHYNI2.430e-2437.61DUF676 domain-containing protein n=2 Tax=Phytophth... [more]
W4FYU1_9STRA1.050e-2232.30DUF676 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A421F5R4_9STRA1.060e-2234.69DUF676 domain-containing protein n=3 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10474contigS-firma_F_contig10474:859..1816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000018821
PFAMsDUF676
Max annot lvl121069|Pythiales
Evalue5.68e-27
EggNOG OGsKOG4372@1|root,KOG4372@2759|Eukaryota,1MDCR@121069|Pythiales
DescriptionSource PGD
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size900
Cds size888
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10474.666.1prot_S-firma_F_contig10474.666.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10474 871..1816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9193578-UTR-S-firma_F_contig10474:858..8701622815581.9193578-UTR-S-firma_F_contig10474:858..870Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10474 859..870 +
1696949432.5947723-UTR-S-firma_F_contig10474:858..8701696949432.5947723-UTR-S-firma_F_contig10474:858..870Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10474 859..870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9353492-CDS-S-firma_F_contig10474:870..13861622815581.9353492-CDS-S-firma_F_contig10474:870..1386Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10474 871..1386 +
1696949432.607227-CDS-S-firma_F_contig10474:870..13861696949432.607227-CDS-S-firma_F_contig10474:870..1386Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10474 871..1386 +
1622815581.949736-CDS-S-firma_F_contig10474:1444..18161622815581.949736-CDS-S-firma_F_contig10474:1444..1816Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10474 1445..1816 +
1696949432.617376-CDS-S-firma_F_contig10474:1444..18161696949432.617376-CDS-S-firma_F_contig10474:1444..1816Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10474 1445..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10474.666.1

>prot_S-firma_F_contig10474.666.1 ID=prot_S-firma_F_contig10474.666.1|Name=mRNA_S-firma_F_contig10474.666.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=296bp
MNGFASDWNSFLGPVKEAFPGARILVARANEGATRHGVVEGGERLAAEIL
DACKSLDGLHSFVIVGHSLGGLYARYACGLLYSNPLTAPGAPGSVLHWVS
YMSLASPHLGSLRPTGSVAKSLWRRAVHGVLYGFYGRTGADLMLAPRTPA
AAGAGADVGTPVLLRMCEGDFIAALRAFEHRTLVAMTDHDMSVPFAGASI
RADDPHGAAPKPPLFGWRSKPTSWHVATLEGWPAEAPARHLLPHVREPSG
ARATRARSSDTAGSSSKLVTDARREVEFSPAVFEALSGLQWRRVDI
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mRNA from alignment at S-firma_F_contig10474:859..1816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10474.666.1 ID=mRNA_S-firma_F_contig10474.666.1|Name=mRNA_S-firma_F_contig10474.666.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=958bp|location=Sequence derived from alignment at S-firma_F_contig10474:859..1816+ (Sphaerotrichia firma ET2_F female)
CAGGTGCACGGCATGAACGGATTCGCTTCCGACTGGAACTCTTTTTTGGG GCCCGTCAAGGAGGCCTTCCCGGGCGCCCGCATTCTGGTGGCCAGAGCCA ACGAAGGGGCCACCAGGCATGGCGTGGTGGAAGGTGGCGAACGGCTGGCA GCCGAAATCTTGGACGCTTGCAAATCGCTGGACGGCCTGCACAGCTTTGT GATTGTGGGGCACTCCCTGGGTGGCCTGTACGCCAGATACGCGTGTGGGT TGCTGTACTCCAACCCGCTGACAGCCCCCGGCGCCCCAGGCAGCGTCCTG CACTGGGTGTCCTACATGTCCCTCGCGAGCCCCCACCTGGGCTCCCTCCG CCCCACTGGCAGCGTTGCAAAGTCGCTTTGGCGCAGGGCCGTCCACGGCG TTTTGTACGGCTTTTACGGCCGCACGGGCGCAGACTTGATGCTGGCACCC CGGACACCAGCGGCTGCCGGCGCCGGTGCAGATGTTGGCACGCCCGTGTT GCTGCGCATGTGTGAGGGAGACTTTATCGTGTGTTCCCCCCAGACCCGCA CCCACACTTAGGTCGTGAACCCCCCCCCCCCCCCAGGCCGCCCTTCGCGC GTTTGAGCACCGCACCCTTGTTGCCATGACAGACCACGACATGAGTGTGC CTTTCGCCGGCGCCAGCATCCGTGCGGACGACCCGCACGGTGCTGCCCCC AAGCCGCCGCTGTTTGGGTGGCGCAGCAAGCCAACGTCGTGGCACGTTGC CACCCTTGAGGGCTGGCCTGCGGAGGCGCCTGCACGGCACCTGCTGCCGC ACGTCCGGGAGCCGAGTGGGGCCCGGGCAACCCGTGCGCGAAGCAGTGAC ACGGCGGGGTCATCGTCAAAGCTCGTCACCGACGCACGGCGTGAGGTTGA GTTTTCTCCGGCGGTGTTCGAAGCCCTGTCGGGGCTGCAGTGGAGGCGTG TGGACATC
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Coding sequence (CDS) from alignment at S-firma_F_contig10474:859..1816+

>mRNA_S-firma_F_contig10474.666.1 ID=mRNA_S-firma_F_contig10474.666.1|Name=mRNA_S-firma_F_contig10474.666.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1776bp|location=Sequence derived from alignment at S-firma_F_contig10474:859..1816+ (Sphaerotrichia firma ET2_F female)
ATGAACGGATTCGCTTCCGACTGGAACTCTTTTTTGGGGCCCGTCAAGGA
GGCCTTCCCGGGCGCCCGCATTCTGGTGGCCAGAGCCAACGAAGGGGCCA
CCAGGCATGGCGTGGTGGAAGGTGGCGAACGGCTGGCAGCCGAAATCTTG
GACGCTTGCAAATCGCTGGACGGCCTGCACAGCTTTGTGATTGTGGGGCA
CTCCCTGGGTGGCCTGTACGCCAGATACGCGTGTGGGTTGCTGTACTCCA
ACCCGCTGACAGCCCCCGGCGCCCCAGGCAGCGTCCTGCACTGGGTGTCC
TACATGTCCCTCGCGAGCCCCCACCTGGGCTCCCTCCGCCCCACTGGCAG
CGTTGCAAAGTCGCTTTGGCGCAGGGCCGTCCACGGCGTTTTGTACGGCT
TTTACGGCCGCACGGGCGCAGACTTGATGCTGGCACCCCGGACACCAGCG
GCTGCCGGCGCCGGTGCAGATGTTGGCACGCCCGTGTTGCTGCGCATGTG
TGAGGGAGACTTTATCATGAACGGATTCGCTTCCGACTGGAACTCTTTTT
TGGGGCCCGTCAAGGAGGCCTTCCCGGGCGCCCGCATTCTGGTGGCCAGA
GCCAACGAAGGGGCCACCAGGCATGGCGTGGTGGAAGGTGGCGAACGGCT
GGCAGCCGAAATCTTGGACGCTTGCAAATCGCTGGACGGCCTGCACAGCT
TTGTGATTGTGGGGCACTCCCTGGGTGGCCTGTACGCCAGATACGCGTGT
GGGTTGCTGTACTCCAACCCGCTGACAGCCCCCGGCGCCCCAGGCAGCGT
CCTGCACTGGGTGTCCTACATGTCCCTCGCGAGCCCCCACCTGGGCTCCC
TCCGCCCCACTGGCAGCGTTGCAAAGTCGCTTTGGCGCAGGGCCGTCCAC
GGCGTTTTGTACGGCTTTTACGGCCGCACGGGCGCAGACTTGATGCTGGC
ACCCCGGACACCAGCGGCTGCCGGCGCCGGTGCAGATGTTGGCACGCCCG
TGTTGCTGCGCATGTGTGAGGGAGACTTTATCGCCGCCCTTCGCGCGTTT
GAGCACCGCACCCTTGTTGCCATGACAGACCACGACATGAGTGTGCCTTT
CGCCGGCGCCAGCATCCGTGCGGACGACCCGCACGGTGCTGCCCCCAAGC
CGCCGCTGTTTGGGTGGCGCAGCAAGCCAACGTCGTGGCACGTTGCCACC
CTTGAGGGCTGGCCTGCGGAGGCGCCTGCACGGCACCTGCTGCCGCACGT
CCGGGAGCCGAGTGGGGCCCGGGCAACCCGTGCGCGAAGCAGTGACACGG
CGGGGTCATCGTCAAAGCTCGTCACCGACGCACGGCGTGAGGTTGAGTTT
TCTCCGGCGGTGTTCGAAGCCCTGTCGGGGCTGCAGTGGAGGCGTGTGGA
CATCGCCGCCCTTCGCGCGTTTGAGCACCGCACCCTTGTTGCCATGACAG
ACCACGACATGAGTGTGCCTTTCGCCGGCGCCAGCATCCGTGCGGACGAC
CCGCACGGTGCTGCCCCCAAGCCGCCGCTGTTTGGGTGGCGCAGCAAGCC
AACGTCGTGGCACGTTGCCACCCTTGAGGGCTGGCCTGCGGAGGCGCCTG
CACGGCACCTGCTGCCGCACGTCCGGGAGCCGAGTGGGGCCCGGGCAACC
CGTGCGCGAAGCAGTGACACGGCGGGGTCATCGTCAAAGCTCGTCACCGA
CGCACGGCGTGAGGTTGAGTTTTCTCCGGCGGTGTTCGAAGCCCTGTCGG
GGCTGCAGTGGAGGCGTGTGGACATC
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