mRNA_S-firma_F_contig10381.546.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10381.546.1
Unique NamemRNA_S-firma_F_contig10381.546.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: G3WIT1_SARHA (COMM domain containing 9 n=8 Tax=Metatheria TaxID=9263 RepID=G3WIT1_SARHA)

HSP 1 Score: 123 bits (308), Expect = 4.620e-33
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   25 TKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            T E + AL P +    LKN ++K+ +  +P W+  + A ++S+PR VDLDWRVDVK AS+ ++RM++PT L+ +K ++ AS  G  PA   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   61 TGEEILALFPENFHQNLKNLLTKIIMEHVPAWRKEAQANQISLPRLVDLDWRVDVKMASDSITRMAVPTCLLQMKIQEDASLCGDKPAISAVTMELSKETLDTMLDGLGRIRDQLSAV 178          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: H3B2P2_LATCH (COMM domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B2P2_LATCH)

HSP 1 Score: 122 bits (305), Expect = 2.090e-32
Identity = 55/117 (47.01%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTIG 381
            E +  L P +    LKN ++K+ + ++P W++ + A ++S+P+ V++DWRVDVK +S+ +SRM++PT L+ +K +D AS  G  P   TV+ ELSKE L+TML GLGRIRDQLS++G
Sbjct:   80 EEILPLFPENFHQNLKNLLTKIILEKIPTWRNEALADQISLPQLVEMDWRVDVKTSSDTISRMAIPTCLLQMKIKDNASLCGSGPIVSTVTVELSKEKLDTMLDGLGRIRDQLSSVG 196          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A337SQQ2_FELCA (COMM domain containing 9 n=5 Tax=Feliformia TaxID=379583 RepID=A0A337SQQ2_FELCA)

HSP 1 Score: 119 bits (299), Expect = 5.240e-32
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            L V  +  + E++ AL P +    LKN ++K+ +  +  W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K R+  S  G  P+   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   28 LAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIREDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAV 153          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A5F5Q4T5_HORSE (COMM domain containing 9 n=1 Tax=Equus caballus TaxID=9796 RepID=A0A5F5Q4T5_HORSE)

HSP 1 Score: 119 bits (297), Expect = 1.050e-31
Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            E++ AL P +    LKN ++K+ +  +  W+S + A ++S+PR VDLDWRVD+K AS+ +SRM++PT L+ +K ++  S  G  P+   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   38 EAILALFPENFHQNLKNLLTKIILEHVSTWRSETQANQISLPRLVDLDWRVDIKTASDSISRMAVPTCLLQMKIQEDPSVCGDGPSVSAVTMELSKETLDTMLDGLGRIRDQLSAV 153          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A7N5KP81_AILME (COMM domain containing 9 n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5KP81_AILME)

HSP 1 Score: 119 bits (297), Expect = 1.050e-31
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            L V  +  + E++ AL P      LKN ++K+ +  +  W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K ++  S  G  P+   V+ ELSKE L+TML GLGRIRDQLST+
Sbjct:   28 LVVFRDLSSAEAILALFPETFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDTMLDGLGRIRDQLSTV 153          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A5F9DQD9_RABIT (COMM domain containing 9 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F9DQD9_RABIT)

HSP 1 Score: 119 bits (297), Expect = 1.050e-31
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            ES+ AL P +    LKN ++K+ +  +  W++ + A ++S+PR +DLDWRVD+K AS+ +SRM++PT L+ +K ++  S  G  P+   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   38 ESILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLIDLDWRVDIKTASDSISRMAVPTCLLQMKIQEDPSLCGDKPSVSAVTMELSKETLDTMLDGLGRIRDQLSAV 153          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A6P6E2Q9_OCTDE (COMM domain-containing protein 9 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6E2Q9_OCTDE)

HSP 1 Score: 120 bits (300), Expect = 1.180e-31
Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            +S+ AL P +    LKN ++K+ +  +  W++ + A ++S+PR VDLDWRVD+KAAS+ +SRM++PT L+ +K ++  S  G  P+   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   80 QSILALFPENFHQNLKNLLTKIILEHVSAWRTEAQASQISLPRLVDLDWRVDIKAASDSISRMAIPTCLLQMKIQEDPSLCGDKPSTSAVTVELSKETLDTMLDGLGRIRDQLSAV 195          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A850ZRF9_SULDA (COMD9 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A850ZRF9_SULDA)

HSP 1 Score: 118 bits (295), Expect = 1.940e-31
Identity = 52/116 (44.83%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            E + +L P D    LKN ++K+ +  +P W++ + A ++S+PR VD+DWRVD+K +S+ +SRM++PT L+ +K ++  +  G  P    ++ ELSKE L+TML GLGRIRDQLS I
Sbjct:   35 EDILSLFPEDFHQNLKNLLTKIILENIPAWRNEAQANQISLPRLVDMDWRVDIKTSSDSISRMAVPTCLLQLKIQEDVALCGNSPVVSALTVELSKETLDTMLEGLGRIRDQLSAI 150          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A8C9K667_PANTA (COMM domain containing 9 n=3 Tax=Eutheria TaxID=9347 RepID=A0A8C9K667_PANTA)

HSP 1 Score: 118 bits (295), Expect = 2.110e-31
Identity = 55/126 (43.65%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            L V  +  + E++ AL P +    LKN ++K+ +  +  W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K ++  S  G  P+   V+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   28 LAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAV 153          
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: UPI001CF9FF23 (COMM domain-containing protein 9 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9FF23)

HSP 1 Score: 119 bits (298), Expect = 2.310e-31
Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    4 YVSSEAMTK-ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
            Y+  + +T  + +  L P +    LKN ++K+F+  +P W++ + A +VS+P+ +D DWRVDVK AS+ ++RM++P+ L+ +K ++ AS  G  P   TV+ ELSKE L+TML GLGRIRDQLS +
Sbjct:   70 YIVFKGLTSADEILPLFPKEFHQSLKNLLTKMFLENIPTWRTEAQANQVSLPQMIDFDWRVDVKTASDNINRMAVPSCLLQMKIQEDASLCGNKPVISTVTVELSKETLDTMLDGLGRIRDQLSAV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3WIT1_SARHA4.620e-3349.15COMM domain containing 9 n=8 Tax=Metatheria TaxID=... [more]
H3B2P2_LATCH2.090e-3247.01COMM domain-containing protein n=2 Tax=Latimeria c... [more]
A0A337SQQ2_FELCA5.240e-3244.44COMM domain containing 9 n=5 Tax=Feliformia TaxID=... [more]
A0A5F5Q4T5_HORSE1.050e-3147.41COMM domain containing 9 n=1 Tax=Equus caballus Ta... [more]
A0A7N5KP81_AILME1.050e-3144.44COMM domain containing 9 n=1 Tax=Ailuropoda melano... [more]
A0A5F9DQD9_RABIT1.050e-3146.55COMM domain containing 9 n=2 Tax=Boreoeutheria Tax... [more]
A0A6P6E2Q9_OCTDE1.180e-3147.41COMM domain-containing protein 9 n=1 Tax=Octodon d... [more]
A0A850ZRF9_SULDA1.940e-3144.83COMD9 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]
A0A8C9K667_PANTA2.110e-3143.65COMM domain containing 9 n=3 Tax=Eutheria TaxID=93... [more]
UPI001CF9FF232.310e-3143.65COMM domain-containing protein 9 isoform X1 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10381contigS-firma_F_contig10381:936..1439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog9305.ENSSHAP00000015336
Preferred nameCOMMD9
PFAMsCOMM_domain
Max annot lvl33208|Metazoa
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0042592,GO:0042632,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048878,GO:0050896,GO:0051179,GO:0051234,GO:0055088,GO:0055092,GO:0060205,GO:0065007,GO:0065008,GO:0070013,GO:0097708,GO:0099503,GO:0101002,GO:1904813
Evalue3.27e-34
EggNOG OGs2CTUB@1|root,2RHPY@2759|Eukaryota,39WGC@33154|Opisthokonta,3BM14@33208|Metazoa,3CY8B@33213|Bilateria,4819C@7711|Chordata,48V8Q@7742|Vertebrata,3J799@40674|Mammalia,4K24Q@9263|Metatheria
DescriptionCOMM domain containing 9
COG categoryS
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10381.546.1prot_S-firma_F_contig10381.546.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10381 936..1418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.3627598-CDS-S-firma_F_contig10381:935..10701622815570.3627598-CDS-S-firma_F_contig10381:935..1070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 936..1070 -
1696949423.5898302-CDS-S-firma_F_contig10381:935..10701696949423.5898302-CDS-S-firma_F_contig10381:935..1070Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 936..1070 -
1622815570.3738666-CDS-S-firma_F_contig10381:1120..12761622815570.3738666-CDS-S-firma_F_contig10381:1120..1276Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 1121..1276 -
1696949423.6036654-CDS-S-firma_F_contig10381:1120..12761696949423.6036654-CDS-S-firma_F_contig10381:1120..1276Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 1121..1276 -
1622815570.383567-CDS-S-firma_F_contig10381:1346..14181622815570.383567-CDS-S-firma_F_contig10381:1346..1418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 1347..1418 -
1696949423.6143463-CDS-S-firma_F_contig10381:1346..14181696949423.6143463-CDS-S-firma_F_contig10381:1346..1418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10381 1347..1418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.396198-UTR-S-firma_F_contig10381:1418..14391622815570.396198-UTR-S-firma_F_contig10381:1418..1439Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10381 1419..1439 -
1696949423.6242251-UTR-S-firma_F_contig10381:1418..14391696949423.6242251-UTR-S-firma_F_contig10381:1418..1439Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10381 1419..1439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10381.546.1

>prot_S-firma_F_contig10381.546.1 ID=prot_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=121bp
MTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDL
DWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKE
ALNTMLSGLGRIRDQLSTIG*
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mRNA from alignment at S-firma_F_contig10381:936..1439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10381.546.1 ID=mRNA_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=504bp|location=Sequence derived from alignment at S-firma_F_contig10381:936..1439- (Sphaerotrichia firma ET2_F female)
CTGTACGTGTCCTCAGAGGCCATGACGAAGGAATCCGTGGCGGCCCTCCT CCCAGCAGACCTTGCAGCTCCGTTGAAGAACTTTGTGTCCAAGGTGTGTG CGTGTGTGTGTCACTTGTGTTTTCGTGTCGTTGCCCGCCCTGACCTATGC ACCCCCTCCCCAGCTGTTTGTGTCTAGATTGCCATTGTGGAAGTCTGCGT CCACCGCACAGCGCGTGTCGATGCCACGGTTTGTTGACCTGGATTGGCGG GTGGACGTCAAGGCCGCGTCGGAGGAGCTGTCGCGCATGAGTTTGCCAAC AGTGTTGGTGGACATAAAGGTGCAGAGACTCCCCCCCTTCCCCTGTTTCC CCCATTGACCCCCTTCCAGTACCGTGACCAAGCGTCGACAGCCGGTGTCA TGCCAGCTGAAGAAACCGTGTCCTTTGAGCTCAGCAAGGAGGCGCTGAAC ACAATGCTGTCAGGGTTGGGTAGAATCCGGGACCAGCTGTCCACCATTGG GTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10381:936..1439-

>mRNA_S-firma_F_contig10381.546.1 ID=mRNA_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=726bp|location=Sequence derived from alignment at S-firma_F_contig10381:936..1439- (Sphaerotrichia firma ET2_F female)
ATGACGAAGGAATCCGTGGCGGCCCTCCTCCCAGCAGACCTTGCAGCTCC
GTTGAAGAACTTTGTGTCCAAGATGACGAAGGAATCCGTGGCGGCCCTCC
TCCCAGCAGACCTTGCAGCTCCGTTGAAGAACTTTGTGTCCAAGCTGTTT
GTGTCTAGATTGCCATTGTGGAAGTCTGCGTCCACCGCACAGCGCGTGTC
GATGCCACGGTTTGTTGACCTGGATTGGCGGGTGGACGTCAAGGCCGCGT
CGGAGGAGCTGTCGCGCATGAGTTTGCCAACAGTGTTGGTGGACATAAAG
CTGTTTGTGTCTAGATTGCCATTGTGGAAGTCTGCGTCCACCGCACAGCG
CGTGTCGATGCCACGGTTTGTTGACCTGGATTGGCGGGTGGACGTCAAGG
CCGCGTCGGAGGAGCTGTCGCGCATGAGTTTGCCAACAGTGTTGGTGGAC
ATAAAGTACCGTGACCAAGCGTCGACAGCCGGTGTCATGCCAGCTGAAGA
AACCGTGTCCTTTGAGCTCAGCAAGGAGGCGCTGAACACAATGCTGTCAG
GGTTGGGTAGAATCCGGGACCAGCTGTCCACCATTGGGTGATACCGTGAC
CAAGCGTCGACAGCCGGTGTCATGCCAGCTGAAGAAACCGTGTCCTTTGA
GCTCAGCAAGGAGGCGCTGAACACAATGCTGTCAGGGTTGGGTAGAATCC
GGGACCAGCTGTCCACCATTGGGTGA
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