mRNA_S-firma_F_contig10370.530.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10370.530.1
Unique NamemRNA_S-firma_F_contig10370.530.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A1Y2HK19_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HK19_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 9.170e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   61 QLAAVNLVVIPIQLTVYLYCTAVMGGR-DPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            QL   N+ V PIQ  VYL   A++ GR + ++ ++     L+KLTW +FP++Q++ +KFVP  L LP FN+V FV
Sbjct:  106 QLVGANVAVAPIQNAVYLAAMAILAGRPNVLDEVERGFMPLMKLTWAVFPVVQLIAVKFVPHDLWLPFFNIVSFV 180          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A0L0SE02_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SE02_ALLM3)

HSP 1 Score: 63.5 bits (153), Expect = 3.010e-10
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   61 QLAAVNLVVIPIQLTVYLYCTAVMGGRDPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            QL   N+ V+PIQ  VYL   A++ G D +  +K     L+KLTW +FP++Q++ +KF+   L LP F  VGFV
Sbjct:   97 QLVGANVFVVPIQNAVYLAAMALISGGDVVAEVKRGFWPLMKLTWSIFPVVQLIAIKFLRPDLWLPFFQAVGFV 170          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A507EI41_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EI41_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 4.210e-10
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 LYSAVARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGG---RDPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            LY+ + R+     G    + +L   NLV+ PIQ  VYL   A + G   R  +++IK  L  LLK+TW +FP +Q++ ++++   L LP FN V FV
Sbjct:   83 LYALMDRIFRGKTGVGAAIGKLLFGNLVIAPIQTAVYLAAMAYIAGANVRTIIQTIKTRLLPLLKITWMVFPTVQIIAIRYIRPELWLPFFNAVSFV 179          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A0L0HEJ5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HEJ5_SPIPD)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-8
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 LYSAVARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGRDP---MESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            LY  + +  +   GA   + +L   NLV+ PIQ  VYL   A + G      ++++K  L  ++K+TW +FP +Q++  K++ + L LP FNLV FV
Sbjct:  111 LYQGLDKAFKDKTGAGWSILKLLVSNLVIAPIQNAVYLAAMAYIAGAGIPGILQTLKTRLLGVMKMTWLIFPSVQIIAFKYLSQELWLPFFNLVAFV 207          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A0C9UUD6_SPHS4 (Uncharacterized protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9UUD6_SPHS4)

HSP 1 Score: 57.8 bits (138), Expect = 4.620e-8
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   55 LAQLAAVNLVVIPIQLTVYLYCTAVMGGRDPMESIKANLT----KLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            LAQ+ A NL+V PIQ TVYL C A++ G   ++ IKA +      ++++TW   PL  V   KF+   L +P FNLV FV
Sbjct:  100 LAQILANNLIVAPIQTTVYLTCMALISGARSIKEIKATVKGGFMAVMRITWMTSPLAIVFAQKFIAPELWVPFFNLVSFV 179          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A4Y7QLR9_9AGAM (Uncharacterized protein n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QLR9_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 8.010e-8
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   40 GAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGR----DPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            G    +AQ+ A NL++ PIQ TVYL   AV+ G     D + +IK     ++++TW   PL  V   KF+P  L +P FNLV FV
Sbjct:  104 GTGAKVAQILASNLLIAPIQTTVYLASIAVINGAKSVDDVIRTIKGGFFAVMRITWITSPLAMVAAQKFIPPELWVPFFNLVSFV 188          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A4S4L614_9AGAM (Uncharacterized protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L614_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 8.300e-8
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    1 LYSAVARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGR----DPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            L + + R      GA   +AQ+   NL++ PIQ +VYL   AV+ G     D + +IK+    ++++TW   PL  V+  KF+P+ L +P FNL+ FV
Sbjct:  409 LVTLLQRAFAGKTGARARIAQILTSNLLLAPIQSSVYLASMAVVNGAKSVDDVVRTIKSGFMPIMRMTWVTSPLAMVVAQKFIPQELWVPFFNLINFV 506          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A2H3CMR5_9AGAR (Uncharacterized protein n=4 Tax=Physalacriaceae TaxID=862241 RepID=A0A2H3CMR5_9AGAR)

HSP 1 Score: 56.2 bits (134), Expect = 2.070e-7
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1
Query:    1 LYSAVARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGRDPMESI----KANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            L  A+ +      G +  + Q+ A NL+V PIQ T+YL   A++ G   ++ I    KA    +L++TW + PL   +  K+VP+ L +P FNL+ FV
Sbjct:   93 LVGAIQKAFAGKTGTSARVQQIIANNLLVAPIQATIYLSSIAIINGTKTLDGIIKTVKAGFLPVLRITWVVSPLSMFVAQKYVPQHLWVPFFNLIQFV 190          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: UPI0020083D13 (uncharacterized protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI0020083D13)

HSP 1 Score: 55.8 bits (133), Expect = 2.380e-7
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   16 ARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGR----DPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV 282
            A +  ++   A  + QL   NLVV PIQ+ VYL CTAV+ G     D  +++KA     L++TW   PL  V+  +++   L +P  NLV FV
Sbjct:   81 APMSHALTSLAAKVGQLLVSNLVVAPIQIAVYLSCTAVINGARTVDDVRKTVKAGFMNALRVTWMTLPLTIVIAQRYLAPELWVPFMNLVQFV 173          
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Match: A0A286URR1_9AGAM (Integral membrane Mpv17 PMP23 family n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286URR1_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 5.280e-7
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   40 GAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGG----RDPMESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGF 279
            GA   L Q+ A NL+V P+Q +VYL   AV+ G     D + ++++    ++++ W   PL  V+  +F+P+ L +P FNLVGF
Sbjct:  105 GARAKLGQILASNLLVAPVQASVYLASMAVINGARTVEDVIRTVQSGFMAIMRINWITSPLALVVAQRFIPQELWVPFFNLVGF 188          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10370.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2HK19_9FUNG9.170e-1144.00Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A0L0SE02_ALLM33.010e-1043.24Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
A0A507EI41_9FUNG4.210e-1037.11Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A0L0HEJ5_SPIPD1.220e-835.05Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A0C9UUD6_SPHS44.620e-843.75Uncharacterized protein n=1 Tax=Sphaerobolus stell... [more]
A0A4Y7QLR9_9AGAM8.010e-841.18Uncharacterized protein n=1 Tax=Rickenella mellea ... [more]
A0A4S4L614_9AGAM8.300e-835.71Uncharacterized protein n=1 Tax=Phellinidium pouza... [more]
A0A2H3CMR5_9AGAR2.070e-734.69Uncharacterized protein n=4 Tax=Physalacriaceae Ta... [more]
UPI0020083D132.380e-737.63uncharacterized protein n=1 Tax=Antrodia serialis ... [more]
A0A286URR1_9AGAM5.280e-736.90Integral membrane Mpv17 PMP23 family n=1 Tax=Pyrrh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10370contigS-firma_F_contig10370:29..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog28583.AMAG_09301T0
PFAMsMpv17_PMP22
Max annot lvl4751|Fungi
Evalue3.52e-11
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota,38CSF@33154|Opisthokonta,3NWCV@4751|Fungi
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.3849804-CDS-S-firma_F_contig10370:28..3101622815569.3849804-CDS-S-firma_F_contig10370:28..310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10370 29..310 +
1696949422.8663077-CDS-S-firma_F_contig10370:28..3101696949422.8663077-CDS-S-firma_F_contig10370:28..310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10370 29..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10370.530.1prot_S-firma_F_contig10370.530.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10370 29..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10370.530.1

>prot_S-firma_F_contig10370.530.1 ID=prot_S-firma_F_contig10370.530.1|Name=mRNA_S-firma_F_contig10370.530.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=94bp
LYSAVARVCESIPGAAGGLAQLAAVNLVVIPIQLTVYLYCTAVMGGRDPM
ESIKANLTKLLKLTWKLFPLIQVLVLKFVPESLVLPTFNLVGFV
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mRNA from alignment at S-firma_F_contig10370:29..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10370.530.1 ID=mRNA_S-firma_F_contig10370.530.1|Name=mRNA_S-firma_F_contig10370.530.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=282bp|location=Sequence derived from alignment at S-firma_F_contig10370:29..310+ (Sphaerotrichia firma ET2_F female)
CTTTACTCCGCCGTGGCTCGGGTTTGTGAAAGCATTCCGGGGGCAGCTGG CGGGCTGGCGCAGCTCGCCGCCGTGAACCTGGTTGTCATCCCCATCCAGT TGACAGTGTACCTGTACTGCACGGCGGTGATGGGGGGGCGGGACCCCATG GAGTCCATCAAGGCCAACCTCACAAAGCTCCTCAAGCTGACGTGGAAGCT GTTCCCCCTCATCCAAGTCCTGGTTCTCAAGTTCGTGCCTGAAAGTTTGG TTCTACCCACGTTCAACCTCGTTGGATTTGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10370:29..310+

>mRNA_S-firma_F_contig10370.530.1 ID=mRNA_S-firma_F_contig10370.530.1|Name=mRNA_S-firma_F_contig10370.530.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=564bp|location=Sequence derived from alignment at S-firma_F_contig10370:29..310+ (Sphaerotrichia firma ET2_F female)
CTTTACTCCGCCGTGGCTCGGGTTTGTGAAAGCATTCCGGGGGCAGCTGG
CGGGCTGGCGCAGCTCGCCGCCGTGAACCTGGTTGTCATCCCCATCCAGT
TGACAGTGTACCTGTACTGCACGGCGGTGATGGGGGGGCGGGACCCCATG
GAGTCCATCAAGGCCAACCTCACAAAGCTCCTCAAGCTGACGTGGAAGCT
GTTCCCCCTCATCCAAGTCCTGGTTCTCAAGTTCGTGCCTGAAAGTTTGG
TTCTACCCACGTTCAACCTCGTTGGATTTGTGCTTTACTCCGCCGTGGCT
CGGGTTTGTGAAAGCATTCCGGGGGCAGCTGGCGGGCTGGCGCAGCTCGC
CGCCGTGAACCTGGTTGTCATCCCCATCCAGTTGACAGTGTACCTGTACT
GCACGGCGGTGATGGGGGGGCGGGACCCCATGGAGTCCATCAAGGCCAAC
CTCACAAAGCTCCTCAAGCTGACGTGGAAGCTGTTCCCCCTCATCCAAGT
CCTGGTTCTCAAGTTCGTGCCTGAAAGTTTGGTTCTACCCACGTTCAACC
TCGTTGGATTTGTG
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