mRNA_S-firma_F_contig10365.517.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10365.517.1
Unique NamemRNA_S-firma_F_contig10365.517.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10365.517.1 vs. uniprot
Match: D8LQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ90_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.630e-15
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:   23 SAARWRDLAVALALVPSVLDAAAVYCFFRLAARTGSAWLALGLFVASVAYACLEVAS----GAKERQGGEVK 226
            SA +WRDL V LAL P  LDA A +CF RLAAR+ SAWLA+GLF+AS  YACL  AS    G  E +GGE K
Sbjct:   82 SARKWRDLVVLLALAPPALDATAQFCFLRLAARSCSAWLAVGLFIASTVYACLVGASVVVAGVAELKGGEAK 153
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BLAST of mRNA_S-firma_F_contig10365.517.1 vs. uniprot
Match: A0A6H5JPX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 7.800e-15
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:   23 SAARWRDLAVALALVPSVLDAAAVYCFFRLAARTGSAWLALGLFVASVAYACLEVAS----GAKERQGGEVK 226
            SA +WRDL V LAL P  LDA A +CF R+AAR+ SAWLA+GLF+AS  YACL  AS    G  E +GGE K
Sbjct:   80 SARKWRDLVVLLALAPPALDATAQFCFLRMAARSCSAWLAVGLFIASTVYACLVGASVVLAGVAELKGGEGK 151
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10365.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ90_ECTSI1.630e-1561.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPX7_9PHAE7.800e-1559.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10365contigS-firma_F_contig10365:962..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.4821978-CDS-S-firma_F_contig10365:962..10791622815568.4821978-CDS-S-firma_F_contig10365:962..1079Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10365 963..1079 -
1696949422.180711-CDS-S-firma_F_contig10365:962..10791696949422.180711-CDS-S-firma_F_contig10365:962..1079Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10365 963..1079 -
1622815568.4923291-CDS-S-firma_F_contig10365:1514..16341622815568.4923291-CDS-S-firma_F_contig10365:1514..1634Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10365 1515..1634 -
1696949422.1908574-CDS-S-firma_F_contig10365:1514..16341696949422.1908574-CDS-S-firma_F_contig10365:1514..1634Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10365 1515..1634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10365.517.1prot_S-firma_F_contig10365.517.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10365 963..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10365.517.1

>prot_S-firma_F_contig10365.517.1 ID=prot_S-firma_F_contig10365.517.1|Name=mRNA_S-firma_F_contig10365.517.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=79bp
GGGPGEVFCGEVAGPCGGAGAGAVGAGRGRCVLLLPAGGEDWQRLACPRP
LCCFGRVRLSGGRERSEGAPRGRGQAQLE
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mRNA from alignment at S-firma_F_contig10365:962..1634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10365.517.1 ID=mRNA_S-firma_F_contig10365.517.1|Name=mRNA_S-firma_F_contig10365.517.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=673bp|location=Sequence derived from alignment at S-firma_F_contig10365:962..1634- (Sphaerotrichia firma ET2_F female)
GGTGGGGGTCCCGGAGAGGTTTTCTGCGGCGAGGTGGCGGGACCTTGCGG
TGGCGCTGGCGCTGGTGCCGTCGGTGCTGGACGCGGCCGCTGTGTACTGC
TTCTTCCGGCTGGCGGCGAGGTGGGTGCGGTTGGAGAGCGAGCGCGCCGC
GGGGGTTGGTTTTGCGGGTTGGTTATTGCTGTGTGTCGTGTCTTGTCTTG
TCTTATCTTGTCTTATCATGTCGTGTCTTGTCATGTCTTGTCTTGTTGTA
TCGTTTGTTAGCTTGCCTTGCCTTGTCTTCTTGTCTTGTCTTGTCTTGGC
TTGTGTTTCGGACATGCTGTACGATAGGAATTTTCGAATTTTTCACCCAC
GGGAGAAGTCATGACACGCGGCCAAGGAGAGAGCCCCCCCCGTCAAGGCC
GACAACGCCCGAAGGAGCGATTCGCTCGCGAAGCGAACCAAAGCGAACCA
AAGCGAACCAAAGCGCGGGGCTCGCTCCTCTTATCACCCCGCCCTGCCCC
GCCCGTGTCCTGCCCCTTTTGTTTTTGTTCGTTTGCTATTCTCGCTGTGT
TCCAGGACTGGCAGCGCTTGGCTTGCCCTCGGCCTCTTTGTTGCTTCGGT
CGCGTACGCCTGTCTGGAGGTCGCGAGCGGAGCGAAGGAGCGCCAAGGGG
GAGAGGTCAAGCTCAACTTGAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10365:962..1634-

>mRNA_S-firma_F_contig10365.517.1 ID=mRNA_S-firma_F_contig10365.517.1|Name=mRNA_S-firma_F_contig10365.517.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=474bp|location=Sequence derived from alignment at S-firma_F_contig10365:962..1634- (Sphaerotrichia firma ET2_F female)
GGTGGGGGTCCCGGAGAGGTTTTCTGCGGCGAGGTGGCGGGACCTTGCGG
TGGCGCTGGCGCTGGTGCCGTCGGTGCTGGACGCGGCCGCTGTGTACTGC
TTCTTCCGGCTGGCGGCGAGGGTGGGGGTCCCGGAGAGGTTTTCTGCGGC
GAGGTGGCGGGACCTTGCGGTGGCGCTGGCGCTGGTGCCGTCGGTGCTGG
ACGCGGCCGCTGTGTACTGCTTCTTCCGGCTGGCGGCGAGGACTGGCAGC
GCTTGGCTTGCCCTCGGCCTCTTTGTTGCTTCGGTCGCGTACGCCTGTCT
GGAGGTCGCGAGCGGAGCGAAGGAGCGCCAAGGGGGAGAGGTCAAGCTCA
ACTTGAGGACTGGCAGCGCTTGGCTTGCCCTCGGCCTCTTTGTTGCTTCG
GTCGCGTACGCCTGTCTGGAGGTCGCGAGCGGAGCGAAGGAGCGCCAAGG
GGGAGAGGTCAAGCTCAACTTGAG
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