prot_S-firma_M_contig9972.20950.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9972.20950.1
Unique Nameprot_S-firma_M_contig9972.20950.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length95
Homology
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BLAST of mRNA_S-firma_M_contig9972.20950.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.400e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0 
Query:   34 SICEMLGRVARNHGTLGTLFEDGLQWIVRELARRSPACRDALGRLGVLP 82
            S+CE LGRVA  HG LGTLFEDGLQWIVRE ARRSPACR+ LGRLG LP
Sbjct: 1108 SVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALP 1156
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BLAST of mRNA_S-firma_M_contig9972.20950.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 8.860e-18
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0 
Query:   34 SICEMLGRVARNHGTLGTLFEDGLQWIVRELARRSPACRDALGRLGVLP 82
            S+CE LGRV   HG LGTLFEDGLQWIVRE ARRSP CR+ LGRLG LP
Sbjct:  331 SVCEALGRVVHTHGALGTLFEDGLQWIVREFARRSPVCRETLGRLGALP 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9972.20950.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8R4_9PHAE7.400e-1981.63E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G3D4_ECTSI8.860e-1877.55E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9972contigS-firma_M_contig9972:1040..1324 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9972.20950.1mRNA_S-firma_M_contig9972.20950.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9972 1010..1324 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9972.20950.1 ID=prot_S-firma_M_contig9972.20950.1|Name=mRNA_S-firma_M_contig9972.20950.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=95bp
MAEGVTDASSGGGGSGGSDAGGGTATASSSSSSSICEMLGRVARNHGTLG
TLFEDGLQWIVRELARRSPACRDALGRLGVLPRAEEAAGAGGGGG
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