prot_S-firma_M_contig9971.20949.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9971.20949.1
Unique Nameprot_S-firma_M_contig9971.20949.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length225
Homology
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BLAST of mRNA_S-firma_M_contig9971.20949.1 vs. uniprot
Match: A0A6H5L969_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L969_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 5.770e-35
Identity = 87/204 (42.65%), Postives = 108/204 (52.94%), Query Frame = 0 
Query:    1 MERWSRRAWLAVSSLWLVACVVVLY-------GGGPT--------------------HQTRQNNPRERVRRQTNVLVLVMPSPPSVSGPLTRIDRLATIQATWGQDLVDSGDNSVVFVVDEADTATTERAVKAWGALEADPLS--PGEGDTSRSQPQREPKKF-----------RVVVVPDEISEGGDDGDGRLRCAYLGAAVS 164
            M +  R  WL VS  W++  +VVL         GGP                     H     + R+R  RQ   +V+VMPSPP VSGP TRIDR  TI+ TWGQDL+D+G+NSVVFVVDEAD  T E A+  WGALE  P     GE   S+  P R  +             RV+VVPD+++ GG DGDGRLR  Y+ A +S
Sbjct:    1 MGKRVRWLWLCVSVCWMLCVLVVLCQRSASPASGGPVLSGKRTTSNSGETAHHRNYDHGNTHPSSRQRGHRQDKTVVVVMPSPPMVSGPSTRIDRFQTIRDTWGQDLMDAGENSVVFVVDEADAGTVEEALGTWGALETSPFPYPSGEDINSKGLPTRHHRTLEQQREQGSETPRVLVVPDDVTRGGTDGDGRLR--YVLARIS 202
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BLAST of mRNA_S-firma_M_contig9971.20949.1 vs. uniprot
Match: D7FS30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS30_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.190e-7
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0 
Query:   53 MPSPPSVSGPLTRIDRLATIQATWGQDLVDSGDNSVVF 90
            MPSPP VSGP TRIDRL TI+ TWGQDL+D+G+N  V 
Sbjct:    1 MPSPPMVSGPSTRIDRLQTIRDTWGQDLMDAGENRYVL 38
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9971.20949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L969_9PHAE5.770e-3542.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS30_ECTSI7.190e-771.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 7.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.744
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9971contigS-firma_M_contig9971:1192..2710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9971.20949.1mRNA_S-firma_M_contig9971.20949.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9971 18..2825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9971.20949.1 ID=prot_S-firma_M_contig9971.20949.1|Name=mRNA_S-firma_M_contig9971.20949.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=225bp
MERWSRRAWLAVSSLWLVACVVVLYGGGPTHQTRQNNPRERVRRQTNVLV
LVMPSPPSVSGPLTRIDRLATIQATWGQDLVDSGDNSVVFVVDEADTATT
ERAVKAWGALEADPLSPGEGDTSRSQPQREPKKFRVVVVPDEISEGGDDG
DGRLRCAYLGAAVSCADSVCRGLSCGQSDITRMQAACSSTRWTAGHQECE
HEEKSSRHGHCGSRSVRHTTAAFG*
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