prot_S-firma_M_contig9894.20875.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9894.20875.1
Unique Nameprot_S-firma_M_contig9894.20875.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length327
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9894.20875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 198..243
e-value: 1.2E-10
score: 41.4
coord: 92..139
e-value: 1.2E-12
score: 47.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 166..194
e-value: 0.065
score: 13.5
coord: 61..90
e-value: 2.4E-6
score: 27.4
coord: 2..22
e-value: 0.58
score: 10.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 130..162
e-value: 0.0013
score: 16.7
coord: 95..128
e-value: 4.5E-8
score: 30.8
coord: 200..234
e-value: 1.9E-8
score: 31.9
coord: 60..94
e-value: 4.5E-8
score: 30.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 163..197
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 12.025
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 58..92
score: 11.312
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..23
score: 6.292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 198..232
score: 13.011
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 8.944
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..140
e-value: 8.9E-32
score: 111.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 141..251
e-value: 1.1E-29
score: 105.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 7..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9894contigS-firma_M_contig9894:133..3222 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9894.20875.1mRNA_S-firma_M_contig9894.20875.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9894 133..3222 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9894.20875.1 ID=prot_S-firma_M_contig9894.20875.1|Name=mRNA_S-firma_M_contig9894.20875.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=327bp
VRACRAAGQAEEALSLLEAMRRGSRAGEGRRREKPAAAAAAAAATGCGGE
GAAVLRPDAFCFNICIDACAKGGLHERALALLGEMRSDGVAPDVVSFNSV
INALGMAGLWKEALSVMEDMVMDGVAPNSVTYASAINACGNSRQLGKALG
LLKEARLAGIEVGTSAYNAAITACGHAGSAADALPLLREMEKRRVPRSVI
TYSSLIDVCGKSGLPDEALEQFRRMLSEGIQPNAITYNALVHASAGGGLK
PPAAEGPRPPLPAPAPAPPSAPPPGAGDSAEPRSMSPDSGAMVGTALEGV
AGGAGAHGERRWERVMPLVEEMQKAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat