prot_S-firma_M_contig987.20855.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig987.20855.1
Unique Nameprot_S-firma_M_contig987.20855.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length158
Homology
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BLAST of mRNA_S-firma_M_contig987.20855.1 vs. uniprot
Match: A0A6H5K7G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.040e-15
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:    3 GVLFVAFNVSHVIDRAAGQVQPASREFYLKAKKKMWAQVVGLCGLTVIWITATGMLELTDIGRGTPSIPWSI 74
            G+ FV  ++SH+ID+ + Q     R+FY KAKK+MW Q   LC L + W+T     ELT +GRGT +IPW +
Sbjct:   60 GISFVGVHLSHLIDKTSRQAPATGRDFYSKAKKRMWLQATALCTLGLAWVTVVLAWELTRLGRGTQTIPWLV 131
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig987.20855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7G7_9PHAE2.040e-1545.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 59..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 91..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig987contigS-firma_M_contig987:513..2276 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig987.20855.1mRNA_S-firma_M_contig987.20855.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig987 512..3148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig987.20855.1 ID=prot_S-firma_M_contig987.20855.1|Name=mRNA_S-firma_M_contig987.20855.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=158bp
MPGVLFVAFNVSHVIDRAAGQVQPASREFYLKAKKKMWAQVVGLCGLTVI
WITATGMLELTDIGRGTPSIPWSISVVVAPTSYTAVAHLSRQKPSAASPR
QVSVATRTKRTSVTTRASATSRAAGGASTLPPPRDIEAATNHRAIVVGAS
RVIPTMG*
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