prot_S-firma_M_contig9792.20780.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig9792.20780.1
Unique Name	prot_S-firma_M_contig9792.20780.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	172

Homology

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.330e-45
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQEAEWRE 80
            MVQD+DGKPRGYAFVEYENEDDMR+AYKRGDGRKIDGRRV VDVERGRTVRNWLPRRFGGGLGDSRKERPKKG EAEWRE
Sbjct:  152 MVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGHEAEWRE 231

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 117 bits (292), Expect = 1.210e-28
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQE 75
            +V D + +PRGYAF+EYE E+DM +AYK+ DGRK+D RR+ VDVERGRTVRNW PRRFGGGLG+SRK +PKKG+E
Sbjct:  147 LVNDLEDQPRGYAFIEYEREEDMHMAYKKADGRKVDSRRLLVDVERGRTVRNWRPRRFGGGLGESRKTKPKKGEE 221

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A812WAQ5_SYMMI (RNU1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WAQ5_SYMMI)

HSP 1 Score: 106 bits (265), Expect = 7.850e-26
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERPKKGQE 75
            MV D DGKPRGYAF+E+ENE DM  AYKR DG+K+D RR+ VDVERGRTVRNW PRRFGGGLG     +PKK ++
Sbjct:   98 MVLDYDGKPRGYAFIEFENEKDMTEAYKRADGKKLDERRILVDVERGRTVRNWYPRRFGGGLGG---RKPKKSKQ 169

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.190e-25
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 70
            +V+D DGK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK  P
Sbjct:  158 LVEDPDGKSRGYGFVEYENESDLKAAYKLADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGP 227

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 109 bits (272), Expect = 1.300e-25
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRKERP 70
            +++D++GK RGYAFVEYE E DM++AYK+ DG+KIDGRRV VDVERGRTVR W PR+FGGG+G++RK  P
Sbjct:  149 LIEDEEGKSRGYAFVEYEKESDMKVAYKQADGKKIDGRRVVVDVERGRTVREWKPRKFGGGIGETRKGGP 218

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: K3X2C0_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2C0_GLOUD)

HSP 1 Score: 108 bits (270), Expect = 2.420e-25
Identity = 48/67 (71.64%), Postives = 60/67 (89.55%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 67
            +V+D++GK RGY FVEYENE D++ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:  151 LVEDEEGKSRGYGFVEYENESDLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 217

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.790e-25
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 67
            +V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:  152 LVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.090e-25
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 67
            +V+D +GK RGY FVEYE E+DM+ AYK  DG+KIDGRRV VDVERGRTVR+WLPR+FGGG+G++RK
Sbjct:  152 LVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRK 218

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: A0A3R6VPV7_9STRA (RRM domain-containing protein (Fragment) n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6VPV7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.600e-25
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 67
            +V+DDDGK RGYAFVEY++E  M+ AYK  DG+KIDGRRV VDVERGRTVR+W PR+ GGG+GD+R+
Sbjct:   53 LVEDDDGKCRGYAFVEYKDEGAMKAAYKNADGKKIDGRRVVVDVERGRTVRDWKPRKLGGGIGDTRR 119

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BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Match: W7TPI8_9STRA (U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.800e-25
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 0

Query:    1 MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTVRNWLPRRFGGGLGDSRK 67
            +V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+ VDVERGRTV+ W+PRR GGGLG +RK
Sbjct:  120 LVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9792.20780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2P6_ECTSI	2.330e-45	95.00	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
H6WBA2_VAULI	1.210e-28	70.67	RRM domain-containing protein n=1 Tax=Vaucheria li...	[more]
A0A812WAQ5_SYMMI	7.850e-26	69.33	RNU1 protein (Fragment) n=1 Tax=Symbiodinium micro...	[more]
A0A5D6XVV7_9STRA	1.190e-25	71.43	RRM domain-containing protein n=1 Tax=Pythium bras...	[more]
A0A8K1CMI4_PYTOL	1.300e-25	68.57	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
K3X2C0_GLOUD	2.420e-25	71.64	RRM domain-containing protein n=1 Tax=Globisporang...	[more]
A0A6G0M502_9STRA	2.790e-25	71.64	RRM domain-containing protein n=1 Tax=Phytophthora...	[more]
A0A6A3TRP9_9STRA	3.090e-25	71.64	RRM domain-containing protein n=1 Tax=Phytophthora...	[more]
A0A3R6VPV7_9STRA	3.600e-25	70.15	RRM domain-containing protein (Fragment) n=2 Tax=A...	[more]
W7TPI8_9STRA	3.800e-25	71.64	U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nann...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..119
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 1..169
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..40 e-value: 4.4E-8 score: 32.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..47 score: 11.179
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..81 e-value: 5.1E-17 score: 64.2
IPR040252	U1 small nuclear ribonucleoprotein 70kDa	PANTHER	PTHR13952:SF5	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA	coord: 1..169
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..69

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9792	contig	S-firma_M_contig9792:872..3544 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9792.20780.1	mRNA_S-firma_M_contig9792.20780.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig9792 39..3718 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig9792.20780.1 ID=prot_S-firma_M_contig9792.20780.1|Name=mRNA_S-firma_M_contig9792.20780.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=172bp
MVQDDDGKPRGYAFVEYENEDDMRIAYKRGDGRKIDGRRVTVDVERGRTV
RNWLPRRFGGGLGDSRKERPKKGQEAEWRERERREAEAKEAEKEAKREKE
RQEERARRDREREEREKSRGPDDKDDGGGGAGGKRADSRERGRRGGSRDR
SRSRDGSRDRRKRSRSRDRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR040252	SNRNP70
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom