prot_S-firma_M_contig970.20697.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig970.20697.1
Unique Nameprot_S-firma_M_contig970.20697.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length305
Homology
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BLAST of mRNA_S-firma_M_contig970.20697.1 vs. uniprot
Match: D7G020_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G020_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.230e-8
Identity = 47/137 (34.31%), Postives = 58/137 (42.34%), Query Frame = 0 
Query:  169 SLEDATFRANHATWGGAVALVSCGEDATVRGSAATTTACTFDGNEASDGGGIYSASGFDQISDSTFINNVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVMSLGPLRSMGDLVFDANVQHCGVGTYGYEKTEV 305
            +L++A FR+N ATWG                              AS GG +  +S    +S STF +N+A                               AVMSLGPLRSM  L F  NVQHCGVGTYGY+ TE+
Sbjct:  113 TLDNAVFRSNDATWG------------------------------ASSGGALAHSSVLLTLSGSTFKSNMAGEEGY--------------------------AVMSLGPLRSMDGLTFAENVQHCGVGTYGYDNTEL 193
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BLAST of mRNA_S-firma_M_contig970.20697.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.270e-5
Identity = 34/100 (34.00%), Postives = 43/100 (43.00%), Query Frame = 0 
Query:  202 ATTTACTFDGNEASDGGGIYSASGFDQISDSTFINNVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVMSLGPLRSMGDLVFDANVQHCGVGTYGYE 301
            A TT C F+ N A DGG IYSA+G+D ISDS F +N+A                               AV SL          F++N  +C  G YGY+
Sbjct:  407 ANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIAVGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYD 506
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig970.20697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G020_ECTSI3.230e-834.31Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FPF6_ECTSI6.270e-534.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19862FAMILY NOT NAMEDcoord: 24..202
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 80..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig970contigS-firma_M_contig970:19744..23802 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig970.20697.1mRNA_S-firma_M_contig970.20697.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig970 19744..23802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig970.20697.1 ID=prot_S-firma_M_contig970.20697.1|Name=mRNA_S-firma_M_contig970.20697.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=305bp
MYQLSVCPGAIFGRNLTSLYIGGTSTLFGNSASTAGGAFAAERSSLTMDT
ERSEFANNTAVSGDGGAISLDGGGDVVDDGTTVLVIGGTSLFSGNAAKNS
SGGALHVQSSTLAVDGNSTFLYNVAGIDGGAVHTTQCREVGVRGNTLFES
NIVPGSGGGFYGGSCDKVSLEDATFRANHATWGGAVALVSCGEDATVRGS
AATTTACTFDGNEASDGGGIYSASGFDQISDSTFINNVAASSGGALAHSS
VLLGLSTSTFRNNTAGEEGYAVMSLGPLRSMGDLVFDANVQHCGVGTYGY
EKTEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence