prot_S-firma_M_contig9642.20643.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9642.20643.1
Unique Nameprot_S-firma_M_contig9642.20643.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length51
Homology
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.380e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            +QDARDLYAKIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:  159 IQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A6H5JXR9_9PHAE (SF3a60_Prp9_C domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-24
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    3 DARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            DARDLYAK KDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:    2 DARDLYAKTKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 49          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A6H5K706_9PHAE (SF3a60_Prp9_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K706_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.790e-23
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    3 DARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            DARDLY KIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYE LARQGLM
Sbjct:   21 DARDLYVKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEGLARQGLM 68          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.210e-23
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            +QDARDLYAKIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:  491 IQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A2D4BU83_PYTIN (C2H2-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU83_PYTIN)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-13
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            +QDA  LY K+KD +D+E WNAE  EE+ED EGNVL+R+TYEDLARQGL+
Sbjct: 2188 MQDAIALYEKLKDQIDQENWNAEKEEEFEDSEGNVLSRKTYEDLARQGLL 2237          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A6V1NE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            ++DA+ LYAK+K  LD + W+    EEYED EGNVLNRRTYEDLARQGL+
Sbjct:   95 IEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A329SA63_9STRA (C2H2-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SA63_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            ++DA  LY K+KD +D E WNA + EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  467 MRDAIQLYEKLKDQIDAESWNASNEEEFEDSEGNVLNRKTYEDLARQGLL 516          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A2P4X7F8_9STRA (Splicing factor 3A n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X7F8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            ++DA  LY K+KD +D E WNA + EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  468 MRDAIQLYEKLKDQIDAESWNASNEEEFEDSEGNVLNRKTYEDLARQGLL 517          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: A0A3R7H2A4_9STRA (C2H2-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H2A4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            ++DA  LY K+KD +D E WNA + EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  470 MRDAIQLYEKLKDQIDAESWNASNEEEFEDSEGNVLNRKTYEDLARQGLL 519          
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Match: K3X6A8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6A8_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 50
            ++DA  LY K+KD +D E WN E+ EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  475 MRDAIQLYEKLKDQIDAENWNPENEEEFEDSEGNVLNRKTYEDLARQGLL 524          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9642.20643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G993_ECTSI9.380e-2596.00Matrin-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JXR9_9PHAE1.350e-2495.83SF3a60_Prp9_C domain-containing protein n=2 Tax=Ec... [more]
A0A6H5K706_9PHAE1.790e-2393.75SF3a60_Prp9_C domain-containing protein n=1 Tax=Ec... [more]
D7FUU5_ECTSI4.210e-2396.00Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A2D4BU83_PYTIN1.040e-1368.00C2H2-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A6V1NE02_HETAK1.160e-1366.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A329SA63_9STRA1.930e-1366.00C2H2-type domain-containing protein n=3 Tax=Phytop... [more]
A0A2P4X7F8_9STRA1.930e-1366.00Splicing factor 3A n=2 Tax=Phytophthora TaxID=4783... [more]
A0A3R7H2A4_9STRA1.930e-1366.00C2H2-type domain-containing protein n=3 Tax=Phytop... [more]
K3X6A8_GLOUD1.930e-1366.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024598Domain of unknown function DUF3449PFAMPF11931DUF3449coord: 1..49
e-value: 3.0E-12
score: 46.7
NoneNo IPR availablePANTHERPTHR12786SPLICING FACTOR SF3A-RELATEDcoord: 2..50
IPR031776Splicing factor 3A subunit 3PANTHERPTHR12786:SF2SPLICING FACTOR 3A SUBUNIT 3coord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9642contigS-firma_M_contig9642:3715..3867 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9642.20643.1mRNA_S-firma_M_contig9642.20643.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9642 3715..3867 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9642.20643.1 ID=prot_S-firma_M_contig9642.20643.1|Name=mRNA_S-firma_M_contig9642.20643.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=51bp
VQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031776SF3A3
IPR024598DUF3449