prot_S-firma_M_contig9625.20626.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9625.20626.1
Unique Nameprot_S-firma_M_contig9625.20626.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length100
Homology
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.310e-36
Identity = 63/99 (63.64%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            M ISD TGK WVTAFNDQ V LLDN++ADEL Q+KE G +AE E++F+EACFKTY++TLR++ +M NDE R + T+QR+ P+D+ AE  ALLDAI+KYN
Sbjct:  321 MQISDNTGKAWVTAFNDQGVELLDNRTADELFQMKEEGNDAELEELFSEACFKTYMLTLRVKTDMYNDETRSRKTLQRLAPVDVKAECAALLDAIAKYN 419          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.070e-36
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            M ISD TGK WVTAFNDQAV LLDN++ADEL Q+KE G +AE E++F+EACFKTY+ TLR++ +M NDE R + T+QRM P+D+ AE  ALLDAI+KYN
Sbjct:  570 MQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGNDAELEELFSEACFKTYMFTLRVKTDMYNDETRSRKTLQRMAPVDVKAECAALLDAIAKYN 668          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.150e-23
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKY 98
            + +SD TG+ W +AFND A P+L   SADEL + K  GQ+  +ED F EAC+K Y++ +R++AEMVNDE R+K T+    P+D   ES AL+ AI  Y
Sbjct:  549 LAMSDHTGQTWFSAFNDVAQPMLAQHSADELFEWKTSGQDELFEDTFVEACWKQYVLRVRVKAEMVNDEQRIKSTIVDAEPVDPVKESAALIRAIKAY 646          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.170e-23
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 DQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            D TG+ W +AFN+ A  +L  ++A+EL Q+ E GQ+  YED F+EA FK Y++T R+++E VNDE RVK T+ R+ P+D   ES+ LL  I+KY+
Sbjct:  346 DHTGQNWFSAFNETAETMLGGQTANELKQMLESGQDNNYEDAFSEANFKPYIVTCRVKSEQVNDETRVKSTLVRLTPVDFVEESKNLLGMIAKYD 440          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: F0WKI4_9STRA (Replication protein A subunit n=2 Tax=Albugo TaxID=65356 RepID=F0WKI4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.470e-19
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKY 98
            + I+D TG  WVT FNDQ   +L+ ++ADE+ ++K+    A +E +F EA FK+Y+  LRI+AE V  E RVK  V  + PID   ES+ LL AISKY
Sbjct:  513 LVIADHTGSSWVTCFNDQGRVILNKRTADEIAEIKDTNT-ALFEAVFKEALFKSYVWRLRIKAENVQGESRVKVNVVNLEPIDYVKESKDLLHAISKY 609          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A5D6Y0Q5_9STRA (Replication protein A subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0Q5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.040e-18
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            + + D TG  W T FNDQ   +L+ ++ADE+ +L+E    A +E  F EA FK Y+  LRI+AE V +E+RVK  V  + PI+  AE++ LL AIS+YN
Sbjct:  540 VVVLDHTGSSWTTCFNDQGKVVLNGRTADEIGELRETNPAA-FEAAFKEALFKQYVFRLRIKAENVQEELRVKAGVVTLEPINYVAEAKDLLKAISQYN 637          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A484E7B5_BRELC (Replication protein A subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B5_BRELC)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-17
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 0
Query:    5 DQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            D TG  W T FNDQ   L+  ++ADE+ +L++    A +E IF EA FK Y+  LR++AE V +E+RVK  V  + P++   ES+ LL+AI+KYN
Sbjct:  533 DHTGSTWTTCFNDQGKVLMGGRTADEVGELRDTNS-ALFESIFREALFKQYVCRLRVKAENVQEELRVKAGVVSLEPLNFVQESKDLLEAIAKYN 626          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A7S2BDJ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDJ1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.680e-17
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKY 98
            +T++D TG + +T FNDQA  +L   SAD+LH LKE G+E +   ++ EA F +YL TL+++ E  NDE R+K     M+P D   ES+ L+  I+ Y
Sbjct:   92 VTLADSTGSRMITLFNDQAEEVL-GMSADDLHNLKESGEEEKVTRVYKEANFGSYLWTLKVKQETYNDENRIKIVGLGMSPYDFAEESKQLIAGINAY 188          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: M4BXU7_HYAAE (Replication protein A subunit n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXU7_HYAAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.930e-17
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 0
Query:    5 DQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            D TG  W T FNDQ   +++ ++ADE+ +L++      +E  F EA FK Y+  LR++AE V +E+RVK  V  + P+D   ES+ LL AI++YN
Sbjct:  469 DHTGSTWTTCFNDQGKVVMNGRTADEIGELRDTNPTL-FESTFKEALFKQYICRLRVKAENVQEELRVKAGVVNLEPVDFVQESKDLLQAIAQYN 562          
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Match: A0A0W8DSC3_PHYNI (Replication protein A subunit n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DSC3_PHYNI)

HSP 1 Score: 84.0 bits (206), Expect = 9.050e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0
Query:    5 DQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEACFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN 99
            D TG  W T FNDQ   ++  ++ADE+ +L++    A +E IF EA FK Y+  LR++AE V +E+RVK  V  + P++   ES+ LL AI++YN
Sbjct:  524 DHTGSTWTTCFNDQGKVVMGGRTADEIGELRDTNP-ALFESIFKEALFKQYVCRLRVKAENVQEELRVKAGVVNLEPVNFVQESKDLLQAIAQYN 617          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9625.20626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU1_ECTSI1.310e-3663.64Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A6H5JTK0_9PHAE3.070e-3665.66Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A835Z8X4_9STRA2.150e-2348.98Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A7S2V6G1_9STRA4.170e-2348.42Replication protein A subunit n=1 Tax=Fibrocapsa j... [more]
F0WKI4_9STRA8.470e-1947.96Replication protein A subunit n=2 Tax=Albugo TaxID... [more]
A0A5D6Y0Q5_9STRA4.040e-1845.45Replication protein A subunit n=1 Tax=Pythium bras... [more]
A0A484E7B5_BRELC1.030e-1745.26Replication protein A subunit n=1 Tax=Bremia lactu... [more]
A0A7S2BDJ1_9STRA1.680e-1742.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M4BXU7_HYAAE8.930e-1742.11Replication protein A subunit n=1 Tax=Hyaloperonos... [more]
A0A0W8DSC3_PHYNI9.050e-1743.16Replication protein A subunit n=12 Tax=Phytophthor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 1..91
e-value: 1.9E-20
score: 73.1
NoneNo IPR availableGENE3D2.40.50.140coord: 1..99
e-value: 5.4E-30
score: 105.8
NoneNo IPR availablePANTHERPTHR23273:SF4REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNITcoord: 1..92
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 1..92
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9625contigS-firma_M_contig9625:1506..2077 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9625.20626.1mRNA_S-firma_M_contig9625.20626.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9625 342..2487 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9625.20626.1 ID=prot_S-firma_M_contig9625.20626.1|Name=mRNA_S-firma_M_contig9625.20626.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=100bp
MTISDQTGKQWVTAFNDQAVPLLDNKSADELHQLKEGGQEAEYEDIFTEA
CFKTYLITLRIRAEMVNDEMRVKHTVQRMNPIDLTAESRALLDAISKYN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR013955Rep_factor-A_C