prot_S-firma_M_contig96.20593.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig96.20593.1
Unique Nameprot_S-firma_M_contig96.20593.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length103
Homology
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BLAST of mRNA_S-firma_M_contig96.20593.1 vs. uniprot
Match: D8LC02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC02_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 8.140e-56
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = 0 
Query:    1 MVDQNVIYGGLVAFAGLAVGAGMVALTEKAGVRSEERGALTYERKMKMQAMFMEDDVVETSDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
            MV+Q++IYGGLVA AGLAVGAGMVALTE+AGVRSEERGAL+YERKMKMQAMFMEDDVVE +DVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW
Sbjct:    1 MVEQDIIYGGLVAVAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
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BLAST of mRNA_S-firma_M_contig96.20593.1 vs. uniprot
Match: A0A7S4ECZ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECZ2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-7
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 0 
Query:    1 MVDQNVIYGGLVAFAGLAVGAGMVALTEKAGVRSEERG--ALTYERKMKMQAMFMEDDVVETSDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
            M+D  VI GG  A  GLAVG GM   +E+   + E+RG  A++   + KM AMFMED+V+  + +DD    M  AL A + E    A+     ++     DDGW
Sbjct:   54 MLDAAVIQGGAAAVGGLAVGLGMAWFSEQQVEQGEQRGSDAVSEATRAKMSAMFMEDEVLPDTTLDDTVSRMEAALAAAKGE---AAVEEKVEEKPASSIDDGW 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig96.20593.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC02_ECTSI8.140e-5692.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4ECZ2_9STRA1.670e-738.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..102
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig96contigS-firma_M_contig96:27355..28982 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig96.20593.1mRNA_S-firma_M_contig96.20593.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig96 27332..31282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig96.20593.1 ID=prot_S-firma_M_contig96.20593.1|Name=mRNA_S-firma_M_contig96.20593.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=103bp
MVDQNVIYGGLVAFAGLAVGAGMVALTEKAGVRSEERGALTYERKMKMQA
MFMEDDVVETSDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADD
GW*
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