prot_S-firma_M_contig9568.20559.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9568.20559.1
Unique Nameprot_S-firma_M_contig9568.20559.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length72
Homology
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.480e-28
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    5 HQIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            ++IFVGGLDQEVNDADFR YFA FGKVEDAVVMYDKKTGRSRGFGFITYD+PD+VRKV
Sbjct:  175 NKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKV 232          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: A0A1A0HH04_9ASCO (Interdomain Rrm packing contributes To Rna recognition in the Rna15, Hrp1, anchor Rna 3 (Fragment) n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HH04_9ASCO)

HSP 1 Score: 79.0 bits (193), Expect = 7.860e-17
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGG+D  VN+ DF  +F+ FG++ DA +M DK TGRSRGFGFITYD+P+ V KV
Sbjct:   89 KIFVGGIDPLVNEKDFNDFFSQFGRIIDAQLMIDKDTGRSRGFGFITYDSPEAVDKV 145          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: A0A1E4TX74_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TX74_PACTA)

HSP 1 Score: 80.9 bits (198), Expect = 3.490e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGG+  EVN+ DF  YF+ FG + DA +M DK TGRSRGFGF+TYD+PD V KV
Sbjct:  202 KIFVGGIAPEVNEKDFNDYFSQFGNIIDAQLMIDKDTGRSRGFGFVTYDSPDAVDKV 258          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: A0A7S1WVL1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WVL1_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 5.130e-16
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            ++FVGGL + V++AD  AYF  FG + D VVM D++TG  RGFG++TYDNP+ V KV
Sbjct:    6 KVFVGGLPRNVSEADLTAYFERFGAITDVVVMKDRETGEPRGFGYVTYDNPESVDKV 62          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: M7Z5M0_TRIUA (DAZ-associated protein 1 n=11 Tax=Triticeae TaxID=147389 RepID=M7Z5M0_TRIUA)

HSP 1 Score: 79.0 bits (193), Expect = 8.990e-16
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    2 HAPHQIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVKG 64
            +A  ++FVGGL   + + +FRAYF  FG V D VV+YD  T RSRGFGF+T+D+ + VRKV G
Sbjct:   91 YASKKVFVGGLRDNITEEEFRAYFEAFGTVTDVVVIYDSLTSRSRGFGFVTFDSEEAVRKVMG 153          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: UPI001F5E31BD (RNA-binding protein 1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E31BD)

HSP 1 Score: 79.3 bits (194), Expect = 9.130e-16
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    2 HAPHQIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVKG 64
            +A  +IF+GGL   + + +FRAYF  FG V D VV+YD  T RSRGFGF+T+D+ + VRKV G
Sbjct:  142 YASKKIFIGGLRDNITEEEFRAYFEAFGTVTDVVVIYDSMTSRSRGFGFVTFDSEEAVRKVMG 204          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: B5RUI1_DEBHA (DEHA2F16698p n=2 Tax=Debaryomyces TaxID=4958 RepID=B5RUI1_DEBHA)

HSP 1 Score: 79.0 bits (193), Expect = 1.450e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGG+D  VN+ DF  +F+ FG + DA +M DK TGRSRGFGFITYD+PD V +V
Sbjct:  171 KIFVGGIDPMVNEKDFNDFFSQFGSIIDAQLMIDKDTGRSRGFGFITYDSPDAVDRV 227          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: A0A512U7S4_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512U7S4_9ASCO)

HSP 1 Score: 79.0 bits (193), Expect = 1.710e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGG+D  VN+ DF  +F+ FG++ DA +M DK TGRSRGFGFITYD+P+ V KV
Sbjct:  296 KIFVGGIDPLVNEKDFNDFFSQFGRIIDAQLMIDKDTGRSRGFGFITYDSPEAVDKV 352          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: UPI00053C4729 (heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4729)

HSP 1 Score: 78.6 bits (192), Expect = 1.970e-15
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGGL   V +ADF+ YFA FG + D VVMYD +T R RGFGFITYD+ D V KV
Sbjct:  107 KIFVGGLASSVTEADFKKYFAQFGTITDVVVMYDHRTQRPRGFGFITYDSEDAVDKV 163          
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Match: A0A642UZY9_DIURU (Uncharacterized protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UZY9_DIURU)

HSP 1 Score: 77.8 bits (190), Expect = 4.300e-15
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    6 QIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKV 62
            +IFVGG+D  VN+ +F  +F+ FG + DA +M DK TGRSRGFGFITYD+PD V +V
Sbjct:  239 KIFVGGIDPMVNEEEFHQFFSQFGSIIDAQLMVDKDTGRSRGFGFITYDSPDAVDRV 295          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9568.20559.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI6.480e-2889.66RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A1A0HH04_9ASCO7.860e-1761.40Interdomain Rrm packing contributes To Rna recogni... [more]
A0A1E4TX74_PACTA3.490e-1663.16Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
A0A7S1WVL1_ALECA5.130e-1656.14Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
M7Z5M0_TRIUA8.990e-1653.97DAZ-associated protein 1 n=11 Tax=Triticeae TaxID=... [more]
UPI001F5E31BD9.130e-1653.97RNA-binding protein 1-like n=1 Tax=Lolium rigidum ... [more]
B5RUI1_DEBHA1.450e-1561.40DEHA2F16698p n=2 Tax=Debaryomyces TaxID=4958 RepID... [more]
A0A512U7S4_9ASCO1.710e-1561.40Uncharacterized protein n=1 Tax=Metschnikowia sp. ... [more]
UPI00053C47291.970e-1563.16heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=... [more]
A0A642UZY9_DIURU4.300e-1559.65Uncharacterized protein n=1 Tax=Diutina rugosa Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..71
e-value: 6.1E-14
score: 62.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..63
e-value: 5.0E-16
score: 58.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..71
score: 14.709
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..68
e-value: 3.3E-20
score: 74.1
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 5..63
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 5..63
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9568contigS-firma_M_contig9568:616..1073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9568.20559.1mRNA_S-firma_M_contig9568.20559.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9568 69..1364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9568.20559.1 ID=prot_S-firma_M_contig9568.20559.1|Name=mRNA_S-firma_M_contig9568.20559.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=72bp
MHAPHQIFVGGLDQEVNDADFRAYFATFGKVEDAVVMYDKKTGRSRGFGF
ITYDNPDVVRKVKGLRSLVYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR037366BOULE/DAZ
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom