prot_S-firma_M_contig9504.20494.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig9504.20494.1
Unique Name	prot_S-firma_M_contig9504.20494.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	203

Homology

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BLAST of mRNA_S-firma_M_contig9504.20494.1 vs. uniprot
Match: D7G616_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G616_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.810e-44
Identity = 127/192 (66.15%), Postives = 136/192 (70.83%), Query Frame = 0

Query:   14 MAVTREEDEGVELANLSLNYVG--SGGDRGEGPGDXXGEEDSAPLLASDGNARAERRXXXXXXXXAESTALRRHLRLLWKTLCGLLCLGTTVSTAVTLVAAVELRRHLGRSFFALPLSVHLLLDALLALTPLLAARADGEXXXXXXXXXSQVEFQRQLRAGRTIAQARXXXXXXXXXXCGGGCFCFRLGLSR 203
            MA+T +++EGVELA LSLN  G   GG+       XX               RA+R XXX      +S  LRRHLRLLWKTLCGLLCLG  VS AVTLVAA+ELRRHLGRSFFALPL+VHLLLDALLAL PLL AR DG XXXXXX   SQVEFQRQLRAGRTIAQAR XXXXXXXXX       FRLGLSR
Sbjct:    1 MAITVDDEEGVELAELSLNDDGHSDGGEXXXXXXXXXXXXXXXXXXXXXXXVRAKRXXXXARKRETQSALLRRHLRLLWKTLCGLLCLGAVVSAAVTLVAAIELRRHLGRSFFALPLAVHLLLDALLALIPLLVARGDGXXXXXXXGPTSQVEFQRQLRAGRTIAQARRXXXXXXXXXXXXXXXXFRLGLSR 192

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9504.20494.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9504.20494.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G616_ECTSI	1.810e-44	66.15	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 88..112
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 146..203
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..87
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 124..145
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 113..123
None	No IPR available	TMHMM	TMhelix		coord: 93..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9504	contig	S-firma_M_contig9504:951..2820 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9504.20494.1	mRNA_S-firma_M_contig9504.20494.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig9504 951..2820 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig9504.20494.1 ID=prot_S-firma_M_contig9504.20494.1|Name=mRNA_S-firma_M_contig9504.20494.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=203bp
KARSKKTQKRRWAMAVTREEDEGVELANLSLNYVGSGGDRGEGPGDGPGE
EDSAPLLASDGNARAERRAKRARKREAESTALRRHLRLLWKTLCGLLCLG
TTVSTAVTLVAAVELRRHLGRSFFALPLSVHLLLDALLALTPLLAARADG
EGEPPPPVPTSQVEFQRQLRAGRTIAQARRRPQDDDDDPCGGGCFCFRLG
LSR