prot_S-firma_M_contig950.20489.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig950.20489.1
Unique Nameprot_S-firma_M_contig950.20489.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length417
Homology
BLAST of mRNA_S-firma_M_contig950.20489.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 4.070e-106
Identity = 277/411 (67.40%), Postives = 301/411 (73.24%), Query Frame = 0
Query:    1 ERGRRYWREEYSGERNEIRFKHFVILAGSVLPVWQKVEDVLNANTHTQHERRLRIVRATEKVDEWNKADE----EEGKAGSGAXXXXXXXXXXXXXXXXXXXXXXXXX-ADGDGK----KEPCCEVCGGGENVEDSDKXXXXXXXXXXXXXXXXXRETDEEPXXXXXXXXXXXXXDGKKXAXXXXXXXTTRGG--TPAFGKGEGKLLACSSEGCGKWFHMGCLDPPLSREPKEGEWVCPVCRKRKAHAEREAKAQAKRDKKKKELAAKLAKAPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEMQREASERKXXXXXXXXXXXXXXXXXXKRAKAAMQLDERNKLKAKAKA----KQPGGXXSVKTEGGEDDEEEGHAP-----ESRAELLTGEVVQLLQG 391
            ++ R YWREEYSGERNEIRFKHFVILAGSVLPVW+KVE VLNANTHTQHERRLRIVRATEK DEWN  D+    E GK G   XXXXXXX                   A GD      ++PCCEVCGG ++V DS  XXXXXXXXXXXXXXXXX       XXXXXXXXXXXXX       XXXXX T RGG   P FGKGEGKLLAC  EGCG+ FHMGCL PPLSR PKEGEW CP+CRKRKAHAEREAKAQAKRD+KK+ELAAKLAK+PVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELE QREA ER+  XXXXXXXXXXXXXXXX   + AM+L+ERNK K KA          G    + E GE+ E++G AP     + R     G++VQLLQG
Sbjct:  364 DKARGYWREEYSGERNEIRFKHFVILAGSVLPVWRKVEGVLNANTHTQHERRLRIVRATEKEDEWNMHDDDGTGENGKEGGXXXXXXXXXKEGAGEKAGSDGGRASGDKAAGDSSSKEDEKPCCEVCGGSQDVGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXVTRRGGWRAPVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXASGDVKREEEAGEE-EQDGGAPVLSSLDGRGSF-NGDLVQLLQG 765          
BLAST of mRNA_S-firma_M_contig950.20489.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 3.760e-87
Identity = 250/533 (46.90%), Postives = 280/533 (52.53%), Query Frame = 0
Query:    1 ERGRRYWREEYSGERNEIRFKHFVILAGSVLPVWQKVEDVLNANTHTQHERRLRIVRATEKVDEWNKADEEEGKAGSGAXXXXXXXXXXXXXXXXXXXXXXXXXADGD------GKKE---PCCEVCGGGENVEDS--------------------------------------------------------------------------------------------------------DKXXXXXXXXXXXXXXXXXRETDEEPXXXXXXXXXXXXXDGKKXAXXXXXXXTT----------------------RGG-TPAFGKGEGKLLACSSEGCGKWFHMGCLDPPLSREPKEGEWVCPVCRKRKAHAEREAKAQAKRDKKKKELAAKLAKAPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEMQREASERKXXXXXXXXXXXXXXXXXXKRAKAAMQLDERNKLKAKAKAKQPGGXXSVKTEG-GEDDEEEGHAP-----ESRAELLTGEVVQLLQG 391
            ++ R YWREEYSGERNEIRFKHFVILAGSVLPVW+KVE VLNANTHTQHERRLRIVRATEK DEW+   +++G  G+G    XXXXXXXX              A GD        KE   PCCEVCGG ++V DS                                                                                                        D+                 RE+ +E                  X XXXXXXX                        RGG  P FGKGEGKLLAC  EGCG+ FHMGCL PPLSR PKEG+W CP+CRKR AH EREAKAQAKRD+KK+ELAAKLAK+PVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELE QREA ER+ XXXXXXXXXXXXXXXXX     AM+L+ERNK K K      G    VK E   +++E++G AP     + R     G++VQLLQG
Sbjct:  524 DKARGYWREEYSGERNEIRFKHFVILAGSVLPVWRKVEGVLNANTHTQHERRLRIVRATEKEDEWDNMPDDDGTGGNGQEGGXXXXXXXXKEGAGEKADSAGGEASGDKATGDSSSKEDEKPCCEVCGGSQDVGDSSGEEEEAAAEVVPAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGEXXXXXXEDEAASSGKKRERAVAXXXXXXXXXXXXXXERDDRGGDGDSDTESRESVMESRESGDEDEAGGMRARLRGCRTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRVTRCRGGRAPVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKVGGGGAGARGDVKREEEAKEEEQDGGAPVLSSLDGRGSF-NGDLVQLLQG 1055          
BLAST of mRNA_S-firma_M_contig950.20489.1 vs. uniprot
Match: A0A7L0G8R5_HERCA (Histone acetyltransferase (Fragment) n=72 Tax=Aves TaxID=8782 RepID=A0A7L0G8R5_HERCA)

HSP 1 Score: 57.4 bits (137), Expect = 4.510e-5
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 0
Query:  189 GKGEGKLLACSSEGCGKWFHMGCLDPPLSREPKEGEWVCPVCRKRK 234
            GK    +L C S  C + FHM C DPPLSR PK G W+C VCR +K
Sbjct:  279 GKNADNMLFCDS--CDRGFHMECCDPPLSRMPKGGMWICQVCRPKK 322          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig950.20489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN05_ECTSI4.070e-10667.40PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE3.760e-8746.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7L0G8R5_HERCA4.510e-554.35Histone acetyltransferase (Fragment) n=72 Tax=Aves... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 294..347
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 114..231
e-value: 2.0E-10
score: 50.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 145..249
e-value: 1.5E-13
score: 52.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 192..232
e-value: 3.5E-10
score: 39.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 112..233
score: 9.552
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 192..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig950contigS-firma_M_contig950:21766..25806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig950.20489.1mRNA_S-firma_M_contig950.20489.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig950 21766..25806 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig950.20489.1 ID=prot_S-firma_M_contig950.20489.1|Name=mRNA_S-firma_M_contig950.20489.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=417bp
ERGRRYWREEYSGERNEIRFKHFVILAGSVLPVWQKVEDVLNANTHTQHE
RRLRIVRATEKVDEWNKADEEEGKAGSGAEEEGKGEGASADAGEGASEAK
DGAEADGDGKKEPCCEVCGGGENVEDSDKDEEEKDGKAASSGRGKGRETD
EEPTSSSSEEEEGEGDDGKKRAVAARRRRTTRGGTPAFGKGEGKLLACSS
EGCGKWFHMGCLDPPLSREPKEGEWVCPVCRKRKAHAEREAKAQAKRDKK
KKELAAKLAKAPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAE
LEMQREASERKEREEKEAQEAVEKERLEAKRAKAAMQLDERNKLKAKAKA
KQPGGGGSVKTEGGEDDEEEGHAPESRAELLTGEVVQLLQGGGARAAKKA
AMQQIKKDAQGGAGLGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD