prot_S-firma_M_contig944.20423.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig944.20423.1
Unique Nameprot_S-firma_M_contig944.20423.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length1172
Homology
BLAST of mRNA_S-firma_M_contig944.20423.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 1015 bits (2625), Expect = 0.000e+0
Identity = 681/1005 (67.76%), Postives = 751/1005 (74.73%), Query Frame = 0
Query:  160 TVSSRLQDVVEQLQGELQTGATPQVRSSIKLDGLFAELRVEQEAGGTAITGINS---TTTXXXXXXXXXXTAPPRSPSGSFTAAPLPRGALEGSHDLESLSDMLDRVQASSKARDLAQAQARSLAIRSGGPIGDSPSHSWVAINNQRDMKTRFKSIREGRVGWAILPLVMKARNAGIPLTTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPDVRPDLGSYNAAMWVCSEAGKWRLVLELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSASPRKHMIEVVHEMEQAGVEPNRYTYTVLLSCLARRRKTFDGFQVMARLVDARAPLLPLGHQAGLAFCNAYGDWRRAMVLMEDMRVARRRPSGSMYLLAVKACARGGQWERALSLMVERRALDVREAKEANEKNGGRAFRPEKAAAAARAKKHAAKIQMQTLEAVLSAVSEAGQFEVAIRLVQQMRAAEDVPSKKCYIYTLRAASKWGRWDVIENLMDEMRALRVGTPDGDGDNGSXXXXXXXXNDEDTPGTKESGGDGGSLRVGGHAGGHNGSRVPSLSSDCYAPLVEAYAQASMWDRTIEAYHEGFKAGV--GRVEPVDYRVYECVLRACVEVNDGPTALQVLRRQAAEPKQLQNAPPADALAAGQR--EVSGGPPDRRCWSLAAEALGRAGMVEEGHRVLMGMVNAGIPLRESTKQDVPSLMPLPTAQDGDGFEWHXXXXXXXXXXXXXXXXXXXXXQQGASPRLPASTA-------------FATAELGSGG--LVAGGTGEEGRNGVEDSPKKHLTTVELPKGVLNGEGCTAAAVAAATAAAATKNGEKTPGMGWLLANDLTSE---MERGAMGGGLLALERKRHRMREFSQRKMEQQKKLERILRKEGADVDRGGXXXXXXXXXXXXXXVNGEQASTGAAAGAAQVDSRPGGRRGRNEALTLRMRARRSTPGVLRNFGVGGGGRGAFDRSGRRDR 1139
            TVSSRLQDVV QLQGEL+ G TPQVRSSIKLD LFA+LR +++       G NS   TTT            P R PSG F AA     AL+ + DLESLS+MLDRVQAS+KARDLA+A+ARSL +RSGGPIGD P+ SWV I NQRDMKTRF++IREGRVGWA+LPLVMKA+ AGIPL+TGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDP VRPDLGSYNAAMWVCSEAG+WRLV+ELM  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSA+PRKHMIEVVHEMEQAGVEPN YT+T LL+CLARRRK FDGFQVMARLVDARAPLLP GH+AGL FC+AYGDWRRAM+LMEDMRVA+RRPSG MYLLAVKACA+G QWERALSLMVERRALDVRE KEANEKNGG+  + +K  AAA+AKK AA+  M+TLE VLSAVSEAGQFEVA+RLVQQMRAA   PSKKCY+YTLRAASKWGRWDVIE+LM +MRALRVG                   D    G   + G+G         GG    R   LSSDCYAPLVEAYAQASMW+R IEAY EGF  G   G   PV YRV+ECVL+ACVEV+DG TAL+V+ RQAAEPK LQ    A       +  E+SGGPPDRRCW LAAEALGRAGM++EGHRVLM MV++GIPLRESTK DVPSLMPLPT   G GFEW XXXXXXXXXXXXXXXXXXXXX  G  P  PA+ A             F++ E G+GG   + GG   E RN V+ S K +L+ +E PKGV+NGEGCTAAAVAAAT       GEKT GMGWLLANDL SE   MER    GGL   ERKR RMREFS ++ EQQKKLERI    GA    G                  + A  G  AG   +D RPGGRRGRNEALTLRMR R    G+LR+F      RGA DR  R++R
Sbjct:   63 TVSSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTS----RGRNSKTPTTTGPKTIPPKSPKQPRRLPSGKFCAAGSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSGPMYLLAVKACAKGAQWERALSLMVERRALDVREEKEANEKNGGKPLQRQKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGV------------VAEKETDAMDDGVVVNNGEG-------KGGGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVFECVLKACVEVSDGRTALEVIGRQAAEPKALQKLSSAITTEGEGKGTELSGGPPDRRCWCLAAEALGRAGMIQEGHRVLMAMVDSGIPLRESTKTDVPSLMPLPTT-GGGGFEWDXXXXXXXXXXXXXXXXXXXXXXPGLPP--PAAMAEMQEAVVRERLGLFSSREDGTGGGSALTGGP-RESRNAVQVS-KSYLSGMEFPKGVVNGEGCTAAAVAAAT-----NGGEKTLGMGWLLANDLASEKSEMERDVQEGGL---ERKRRRMREFSLKRREQQKKLERICTT-GAGYRSGRLNGGLPVGKA-------DDAGVGVTAG---LDLRPGGRRGRNEALTLRMRVRGRRMGILRSF------RGANDRPRRKER 1014          
BLAST of mRNA_S-firma_M_contig944.20423.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 675 bits (1741), Expect = 1.910e-227
Identity = 442/651 (67.90%), Postives = 500/651 (76.80%), Query Frame = 0
Query:   46 LLLGATHA-STTVPAPPGSDSTTAWLQHGHRCADHGQ--PITGGSWGQGRTVLYSRDQEDEGSVSSSGDGATHAATAAADAHMMSRGDGEGQEACGLGEQGKGKARCEEAWPEEESSTVSSRLQDVVEQLQGELQTGATPQVRSSIKLDGLFAELRVEQEAGGTAITGINSTTTXXXXXXXXXXTAPPRSP-------SGSFTAAPLPRGALEGSHDLESLSDMLDRVQASSKARDLAQAQARSLAIRSGGPIGDSPSHSWVAINNQRDMKTRFKSIREGRVGWAILPLVMKARNAGIPLTTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPDVRPDLGSYNAAMWVCSEAGKWRLVLELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSASPRKHMIEVVHEMEQAGVEPNRYTYTVLLSCLARRRKTFDGFQVMARLVDARAPLLPLGHQAGLAFCNAYGDWRRAMVLMEDMRVARRRPSGSMYLLAVKACARGGQWERALSLMVERRALDVREAKEANEKNGGRAFRPEKAAAAARAKKHAAKIQMQTLEAVLSAVSEAGQFEVAIRLVQQMRAAEDVPSKKCYIYTLRAASKWGRWDVIENLMDEMRALRVG 686
            ++ GATHA S  +P   G    T  L H + C   G+    T   W QG + LYS        V+S+   + +++   +  H   R     ++   LGE+ +  A   E       STVSSRLQDVV QLQGEL+ G+TPQVRSSIKLDGLFA+LR +++       G NSTTT          T PP+SP       +G  +AA     ALEG+ DLESLSDMLDRVQAS+KARDLA+A+ARSLA+RSGGPIGD P  SWV I NQRD+KTRF++IREGRVGWA+LPLVMKA+ AGIPL+TGVYNAAIAAY+GTPRKYEDALRVLNMLRREEDP VRPDLGSYNAAMWVCSEAG+WRLV+ELM  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSA+PRKHMIEVVHEMEQAGVEPN YT+T LL CLARRRKTFDGFQ  ARLVDARAPLLP GH+AGL FC+AYGDWRRAM+LMEDMRVA+RRPS  MYLLAVKACA+G          VERRALDVRE KE +EKNGG+  + +K  A A+AKK AA+  M+TLE VLSAVSEAGQFEVA+RLVQQMRAA   PSKKCY+YTLRAASKWGRWDVIE+LM +MRALRVG
Sbjct:    1 MIFGATHAASAAIPVAVGG---TGRLLHSYGCCCAGRRRSTTVRPWAQGISALYSVGHGSGKQVASTDSSSRNSSGDCS--HAQRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXSTVSSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTP----RGRNSTTTTTTGPN----TIPPKSPKQQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQ--ARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGXXXXXXXXXXVERRALDVREEKEMDEKNGGKPLKRKKVEAVAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVG 636          
BLAST of mRNA_S-firma_M_contig944.20423.1 vs. uniprot
Match: A0A6H5L7D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D9_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.470e-105
Identity = 255/417 (61.15%), Postives = 282/417 (67.63%), Query Frame = 0
Query:  739 LSSDCYAPLVEAYAQASMWDRTIEAYHEGFKAGV--GRVEPVDYRVYECVLRACVEVNDGPTALQVLRRQAAEPKQLQNAPPADALAAGQR--EVSGGPPDRRCWSLAAEALGRAGMVEEGHRVLMGMVNAGIPLRESTKQDVPSLMPLPTAQDGDGFEWHXXXXXXXXXXXXXXXXXXXXXQQGASPRLPASTA-------------FATAELGSGG--LVAGGTGEEGRNGVEDSPKKHLTTVELPKGVLNGEGCTAAAVAAATAAAATKNGEKTPGMGWLLANDLTSE---MERGAMGGGLLALERKRHRMREFSQRKMEQQKKLERILRKEGADVDRGGXXXXXXXXXXXXXXVNGEQASTGAAAGAAQVDSRPGGRRGRNEALTLRMRARRSTPGVLRNFGVGGGGRGAFDR 1133
            LSSDCYAPLVEAYAQASMW+R IEAY EGF  G   G   PV YRVYECVL+ACVEV+DG TAL+V+ RQAAEPK LQ            +  E+SGGPPDRRCW LAAEALGRAGM+ EGHRVLM MV++GIPLRESTK DVPSLMP+PT   G GFEW+ XXXXXXXXXXXXXXXXXXXX  G  P  PA+ A             F++ E G GG   V GG   E RN V+ S K +L+ VE PKGV+NGEGCTAAAVAAAT     K+GEKT GMGWLLANDLTSE   MERG   GGL   ERKR RMREFS ++ EQQKKL+RI R  GA  DR G                 + A  G AAG   +D RPGGRRGRNEALTLRMR R    G+LR+F      RGA DR
Sbjct:    2 LSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALEVIGRQAAEPKALQKMSSTITTEGEGKGAELSGGPPDRRCWCLAAEALGRAGMINEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGG-GFEWNQXXXXXXXXXXXXXXXXXXXXXPGLPP--PAAVAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGP-RESRNAVQVS-KNYLSGVEFPKGVVNGEGCTAAAVAAAT-----KSGEKTLGMGWLLANDLTSEKSEMERGVQEGGL---ERKRRRMREFSLKRREQQKKLQRI-RTTGAG-DRSGRINGGLPVGKA------DDAGVGVAAG---LDLRPGGRRGRNEALTLRMRVRGKRMGILRSF------RGANDR 388          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig944.20423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLV0_ECTSI0.000e+067.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L472_9PHAE1.910e-22767.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7D9_9PHAE2.470e-10561.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1023..1050
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 467..678
coord: 611..822
coord: 334..495
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..1171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.672
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 409..454
e-value: 4.3E-8
score: 33.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 470..507
e-value: 8.9E-4
score: 19.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 413..446
e-value: 9.5E-6
score: 23.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 552..586
score: 6.818
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 740..774
score: 6.632
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 482..516
score: 7.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 835..869
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 618..652
score: 7.629
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 336..367
score: 6.873
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 10.589
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 653..687
score: 5.919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 779..809
score: 5.108
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..481
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 9.405
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 534..685
e-value: 7.2E-7
score: 30.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 732..881
e-value: 7.9E-9
score: 37.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 378..509
e-value: 1.9E-27
score: 97.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig944contigS-firma_M_contig944:5708..13096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig944.20423.1mRNA_S-firma_M_contig944.20423.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig944 5673..13570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig944.20423.1 ID=prot_S-firma_M_contig944.20423.1|Name=mRNA_S-firma_M_contig944.20423.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=1172bp
MGFKRKATLVLSLSWVAPPVSPLLTAIAPSAKAKTPVTYQGSTLTLLLGA
THASTTVPAPPGSDSTTAWLQHGHRCADHGQPITGGSWGQGRTVLYSRDQ
EDEGSVSSSGDGATHAATAAADAHMMSRGDGEGQEACGLGEQGKGKARCE
EAWPEEESSTVSSRLQDVVEQLQGELQTGATPQVRSSIKLDGLFAELRVE
QEAGGTAITGINSTTTTTATATTVATTAPPRSPSGSFTAAPLPRGALEGS
HDLESLSDMLDRVQASSKARDLAQAQARSLAIRSGGPIGDSPSHSWVAIN
NQRDMKTRFKSIREGRVGWAILPLVMKARNAGIPLTTGVYNAAIAAYSGT
PRKYEDALRVLNMLRREEDPDVRPDLGSYNAAMWVCSEAGKWRLVLELMA
QAQQEGVEPDTTSYNHAMKGMAVQKQWTRARKLLKRMMSEGLSPDVRTYN
GLVEAAGMGSASPRKHMIEVVHEMEQAGVEPNRYTYTVLLSCLARRRKTF
DGFQVMARLVDARAPLLPLGHQAGLAFCNAYGDWRRAMVLMEDMRVARRR
PSGSMYLLAVKACARGGQWERALSLMVERRALDVREAKEANEKNGGRAFR
PEKAAAAARAKKHAAKIQMQTLEAVLSAVSEAGQFEVAIRLVQQMRAAED
VPSKKCYIYTLRAASKWGRWDVIENLMDEMRALRVGTPDGDGDNGSDSDN
GSDNNDEDTPGTKESGGDGGSLRVGGHAGGHNGSRVPSLSSDCYAPLVEA
YAQASMWDRTIEAYHEGFKAGVGRVEPVDYRVYECVLRACVEVNDGPTAL
QVLRRQAAEPKQLQNAPPADALAAGQREVSGGPPDRRCWSLAAEALGRAG
MVEEGHRVLMGMVNAGIPLRESTKQDVPSLMPLPTAQDGDGFEWHQRKRR
RRPRRQQQPQPQPQPQQQGASPRLPASTAFATAELGSGGLVAGGTGEEGR
NGVEDSPKKHLTTVELPKGVLNGEGCTAAAVAAATAAAATKNGEKTPGMG
WLLANDLTSEMERGAMGGGLLALERKRHRMREFSQRKMEQQKKLERILRK
EGADVDRGGGASGGGGGGSGGGGVNGEQASTGAAAGAAQVDSRPGGRRGR
NEALTLRMRARRSTPGVLRNFGVGGGGRGAFDRSGRRDRGGPLDKAGRRR
NGGEDDRASSGGGVAAQEAKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat