prot_S-firma_M_contig9425.20407.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9425.20407.1
Unique Nameprot_S-firma_M_contig9425.20407.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length293
Homology
BLAST of mRNA_S-firma_M_contig9425.20407.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 5.870e-70
Identity = 164/310 (52.90%), Postives = 191/310 (61.61%), Query Frame = 0
Query:    1 MKRAVESKVSRVAELERSRDELVARVVEATSREKGAGERLFALEEEMADAKTAAADAGGRLKAKRKAVKDAERRARHTASR---------------------------AQAGDSSXXXXXXXXXXXXXXXKPAAXXXATATVTGWEGEGSRAGNSNKENFPKTIPAKLSDEELLAKKHELAAKEKLLSSELRSLRRCSDEQQTNAASGSGRKGRPKSGGTAGSQAVVVAGSVDEVTVRKRRAKVGVLKKQLASVLEGARQLEAGVQACEGRMHEANEAAYASVRGELRTLFGAICVNKSADLVMVGPKVR 283
            MKRA+E KVSRV ELER RDEL AR+ EA +RE+GAGER   LEEE+ADAKT AAD G RLKAKRK++K++ERR    A+R                           A   ++S                P     A   VT WEG    A +++KENFP    A+LS+ ELL KKH+LAAK+KLLS+ELR LR  S + Q +                       VAGSVDEVTV KRRAKVG+LK+QL SVLEG RQLEAGV ACEGRMHEANEA YASVRGELR+LFGA+C NKSADLVM GPK+ 
Sbjct:  258 MKRALERKVSRVEELERRRDELTARLKEANAREEGAGERASKLEEEIADAKTTAADTGARLKAKRKSLKESERRVCQAAARLGGEDLAGPDGTVSGGSCNGGGEGGGSADLPEASSFGPAVRQGASSAAITPTTVAAAAGGVTNWEGI-DEARSNDKENFP----AQLSEAELLGKKHQLAAKQKLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXX--XXXXVAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLE 560          
BLAST of mRNA_S-firma_M_contig9425.20407.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 5.160e-58
Identity = 154/312 (49.36%), Postives = 176/312 (56.41%), Query Frame = 0
Query:    1 MKRAVESKVSRVAELERSRDELVARVVEATSREKGAGERLFALEEEMADAKTAAADAGGRLKAKRKAVKDAERRARHTASR----------------------------AQAGDSSXXXXXXXXXXXXXXXKPAAXXXATATVTGWEGEGSRAGNSNKENFPKTIPAKLSDEELLAKKHELAAKEKLLSSELRSLRRCSDE-QQTNAASGSGRKGRPKSGGTAGSQAVVVAGSVDEVTVRKRRAKVGVLKKQLASVLEGARQLEAGVQACEGRMHEANEAAYASVRGELRTLFGAICVNKSADLVMVGPKVR 283
            MK A+E K+SRV ELER                         LEEEMADAKT AAD G RL+AKRK++K++ERR    A+R                            A   ++S                PAA   A   VTGWEG     GN +KENFP    A+LS+ ELL KKH+LAAK+KLLS+ELR LRR S + QQ                        VVAGSVDEVTV KRRAKVG+LK+QL SVLEG RQLEAGV ACEGRMHEANEA YASVRGELR+LFGA+C NKSADLVM GPK+ 
Sbjct:  728 MKSALERKISRVEELERXXXXXXXXXXXXXXXXXXXXXXASKLEEEMADAKTTAADTGARLEAKRKSLKESERRMHQAAARLGGEDLAGPDGTVSGGSCSXXXXXXXXSADLPEASSFDPAVRQGASSAAITPAAVAAAAGGVTGWEGTDDARGN-DKENFP----AQLSEAELLGKKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLE 1034          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9425.20407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE5.870e-7052.90SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI5.160e-5849.36SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9425contigS-firma_M_contig9425:163..3311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9425.20407.1mRNA_S-firma_M_contig9425.20407.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9425 86..3684 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9425.20407.1 ID=prot_S-firma_M_contig9425.20407.1|Name=mRNA_S-firma_M_contig9425.20407.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=293bp
MKRAVESKVSRVAELERSRDELVARVVEATSREKGAGERLFALEEEMADA
KTAAADAGGRLKAKRKAVKDAERRARHTASRAQAGDSSSSGAGSSESSTA
GTTKPAAAATATATVTGWEGEGSRAGNSNKENFPKTIPAKLSDEELLAKK
HELAAKEKLLSSELRSLRRCSDEQQTNAASGSGRKGRPKSGGTAGSQAVV
VAGSVDEVTVRKRRAKVGVLKKQLASVLEGARQLEAGVQACEGRMHEANE
AAYASVRGELRTLFGAICVNKSADLVMVGPKVRGFCGVVCGA*
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