prot_S-firma_M_contig9424.20406.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9424.20406.1
Unique Nameprot_S-firma_M_contig9424.20406.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length110
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9424.20406.1 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.380e-39
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 0 
Query:    1 MVDEAAEAETRRVKKEVXXXXXXXXXXXTEREELLVEAMDADDAMGSYDPWGTGKYKGFEIAKDVPRGPEEEAAGAAGAGEGGAAVSFKKRKGPGNKGKFRKKSRDDDE 109
            MVD AAEAE RRVKKEV XXXXXXXXXX  RE++LVEAMDADDAMGSYDPWGTGKYKGFEIA D PRGPEEEAAG       G AV+FKKRKGPGNKGKFRKK+RDDDE
Sbjct:  334 MVDVAAEAEARRVKKEVKXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEIANDAPRGPEEEAAGXXXXXXXGPAVAFKKRKGPGNKGKFRKKARDDDE 442
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9424.20406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFI0_9PHAE3.380e-3982.57Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9424contigS-firma_M_contig9424:1595..2348 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9424.20406.1mRNA_S-firma_M_contig9424.20406.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9424 1202..3584 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9424.20406.1 ID=prot_S-firma_M_contig9424.20406.1|Name=mRNA_S-firma_M_contig9424.20406.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=110bp
MVDEAAEAETRRVKKEVKKEKKQKREAKTEREELLVEAMDADDAMGSYDP
WGTGKYKGFEIAKDVPRGPEEEAAGAAGAGEGGAAVSFKKRKGPGNKGKF
RKKSRDDDE*
back to top