prot_S-firma_M_contig9403.20392.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9403.20392.1
Unique Nameprot_S-firma_M_contig9403.20392.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length55
Homology
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BLAST of mRNA_S-firma_M_contig9403.20392.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.250e-6
Identity = 30/41 (73.17%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:   21 RAVPG----LLMATTDRNSA--RGGSQVGGRHGGMNDAPLT 55
            RAVP     L  A  DRNSA  RGGSQVGGRHGGMNDAPLT
Sbjct:  134 RAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLT 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9403.20392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQT7_ECTSI9.250e-673.17RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9403contigS-firma_M_contig9403:2328..3788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9403.20392.1mRNA_S-firma_M_contig9403.20392.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9403 2328..3790 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9403.20392.1 ID=prot_S-firma_M_contig9403.20392.1|Name=mRNA_S-firma_M_contig9403.20392.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=55bp
FERRHPHAQQDHWRASRVRLRAVPGLLMATTDRNSARGGSQVGGRHGGMN
DAPLT
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