prot_S-firma_M_contig9376.20343.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9376.20343.1
Unique Nameprot_S-firma_M_contig9376.20343.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length107
Homology
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BLAST of mRNA_S-firma_M_contig9376.20343.1 vs. uniprot
Match: D8LQA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.290e-47
Identity = 85/115 (73.91%), Postives = 91/115 (79.13%), Query Frame = 0 
Query:    1 RHILPGDVSAG-----GGGEPDA--STERYFSVRWMLERERAREESDDCSSAFAIIPVVGVCLMVLYVVCLDQASQGLMVWLGGKSPLAEFMPFKLLGEVVVAGGDE--IPGAYA 106
            RH LPGD   G      G + DA  S+ERYFS RWMLERERAREESDDCS AFAIIPVVGVCLMVLYVV LDQASQGL+VWL G SPLAE +PFK+LGE+V  GGDE  IPGAYA
Sbjct:   11 RHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMV-GGGDEMAIPGAYA 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9376.20343.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQA8_ECTSI2.290e-4773.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..106
NoneNo IPR availableTMHMMTMhelixcoord: 45..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9376contigS-firma_M_contig9376:522..2190 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9376.20343.1mRNA_S-firma_M_contig9376.20343.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9376 522..2190 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9376.20343.1 ID=prot_S-firma_M_contig9376.20343.1|Name=mRNA_S-firma_M_contig9376.20343.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=107bp
RHILPGDVSAGGGGEPDASTERYFSVRWMLERERAREESDDCSSAFAIIP
VVGVCLMVLYVVCLDQASQGLMVWLGGKSPLAEFMPFKLLGEVVVAGGDE
IPGAYA*
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