prot_S-firma_M_contig937.20339.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig937.20339.1
Unique Nameprot_S-firma_M_contig937.20339.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length188
Homology
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 4.150e-126
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPSGGAGGGVPSGLPGMRTR 187
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVD+QESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL AINDQNRLHAASNKVGLPPSGGIS HGRPSGG GGG  SG+PGMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGRPSGGVGGGGSSGIPGMRTR 187          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 282 bits (721), Expect = 7.820e-95
Identity = 133/157 (84.71%), Postives = 150/157 (95.54%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGL 157
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L+A+NDQ++LHAAS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.770e-93
Identity = 134/155 (86.45%), Postives = 143/155 (92.26%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKV 155
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLHA S K 
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKT 155          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.340e-90
Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 152
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.550e-88
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPS 170
            MI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ+R+H ASNK   P +G     GRPS
Sbjct:   14 MIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTGNAVGRGRPS 182          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.820e-88
Identity = 127/164 (77.44%), Postives = 143/164 (87.20%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGIS 164
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LHAAS K  +  + G+S
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLS 164          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 263 bits (671), Expect = 2.810e-87
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNK 154
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 258 bits (660), Expect = 5.690e-86
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLH 149
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (660), Expect = 1.570e-85
Identity = 120/152 (78.95%), Postives = 139/152 (91.45%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 152
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVD+QESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152          
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 262 bits (669), Expect = 1.600e-84
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = 0
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLP 158
            MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig937.20339.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI4.150e-12696.26AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA7.820e-9584.71AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA1.770e-9386.45AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA1.340e-9082.89AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA1.550e-8877.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2P852_9STRA1.820e-8877.44AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
B5YNE9_THAPS2.810e-8781.17AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A8J9T0F8_PHATR5.690e-8680.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO1.570e-8578.95AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC1.600e-8480.38Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..156
e-value: 2.2E-52
score: 174.9
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..163
NoneNo IPR availableGENE3D3.30.450.60coord: 1..157
e-value: 6.5E-59
score: 200.1
NoneNo IPR availablePANTHERPTHR11753:SF10AP-3 COMPLEX SUBUNIT SIGMA-2coord: 1..163
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..147
e-value: 6.8E-47
score: 159.0
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 64..74
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig937contigS-firma_M_contig937:18395..20467 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig937.20339.1mRNA_S-firma_M_contig937.20339.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig937 17532..20497 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig937.20339.1 ID=prot_S-firma_M_contig937.20339.1|Name=mRNA_S-firma_M_contig937.20339.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=188bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHA
ASNKVGLPPSGGISVHGRPSGGAGGGVPSGLPGMRTR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR000804Clathrin_sm-chain_CS
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu