prot_S-firma_M_contig9315.20272.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9315.20272.1
Unique Nameprot_S-firma_M_contig9315.20272.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length209
Homology
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 3.210e-127
Identity = 193/209 (92.34%), Postives = 196/209 (93.78%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIAGKGSAPAAVARLKFCNVKPGSGSGLSGLPAGEGGAATKLHE 209
            MCRPVLHL SGRMEWIGPM QQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRD+AGKG+ PAAVARLKFCNVKPGS      + AG   AATKLHE
Sbjct:  596 MCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDVAGKGAGPAAVARLKFCNVKPGS------VGAGGAAAATKLHE 798          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A7S2EG60_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EG60_TRICV)

HSP 1 Score: 262 bits (670), Expect = 2.950e-86
Identity = 125/168 (74.40%), Postives = 146/168 (86.90%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIA 168
            + RPVL   +GR E+IGPMEQ FM+IACL +DVR G+TTH ELDPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAH L P+R DNK+Y++  PQA +VQT RHGE+++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ERGFGHASV KT  + L++ A
Sbjct:   39 VVRPVLQRSTGRTEYIGPMEQPFMDIACLPEDVREGVTTHMELDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PNRPDNKLYRLQNPQAPVVQTARHGEFRMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTVKMTLKEAA 205          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 283 bits (723), Expect = 3.030e-85
Identity = 131/185 (70.81%), Postives = 155/185 (83.78%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIAGKGSAPAAVARLKFCNV 185
            M RPVL++   + EWIGP+EQ FMEIACLA + +    TH E+DPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCL PH+TDNKMY++LFPQA +V TRRH E+Q+D+YPQGTNAVVAVISYTGFDMEDAMILNKS+FERGF HASV+KT  +DL+D+  K  +   V +++F N 
Sbjct:  632 MIRPVLNIEFCKREWIGPLEQPFMEIACLASEAKGTGATHCEIDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLYPHKTDNKMYRILFPQAPLVMTRRHREFQMDNYPQGTNAVVAVISYTGFDMEDAMILNKSAFERGFAHASVVKTIKIDLKDLLTKSDSKTMVGKMRFTNT 816          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 266 bits (679), Expect = 8.990e-83
Identity = 134/189 (70.90%), Postives = 153/189 (80.95%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIAGKGSA--PAAVARLKFCNVKP 187
            M RPVL   SGR+E IGP+EQ  +E+ACL ++V  G TTH+ELDPTNMLSL+ASLTPFSD NQSPRNMYQCQMGKQTMGTPAHC+ PHRTDNKMYK+  PQA IVQTRRH EYQLD+YPQGTNAVVAVISYTGFDMEDAMILNK+SFERGF HAS+ KT  ++L D   K ++        L+F N +P
Sbjct:   40 MVRPVLQRASGRIELIGPLEQTHLEVACLPEEVHEG-TTHQELDPTNMLSLIASLTPFSDQNQSPRNMYQCQMGKQTMGTPAHCM-PHRTDNKMYKIQTPQAPIVQTRRHAEYQLDEYPQGTNAVVAVISYTGFDMEDAMILNKASFERGFAHASIYKTKIINLDDEEEKAASLEDGTKPTLRFGNTRP 226          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.400e-81
Identity = 134/187 (71.66%), Postives = 155/187 (82.89%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIA---GKGSAPAAVARLKFCN 184
            + RPVLH  +G  E IGPMEQ F++IACL  D+R G+TTH+ELDPTNMLSL++SLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQA +VQT RHGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSSFERGFGHASV KT  VDLR+ A   G  +A    +R+KF N
Sbjct:  709 LVRPVLHRSTGCAELIGPMEQPFLDIACLPQDIREGITTHQELDPTNMLSLISSLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PHRTDNKLYRLQNPQAPVVQTSRHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSFERGFGHASVYKTMQVDLREEAERRGSSTASGEKSRVKFGN 894          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.590e-81
Identity = 136/190 (71.58%), Postives = 156/190 (82.11%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIAG------KGSAPAAVARLKFCN 184
            + RPVLH  SG+ E IGPMEQ FM+IACLA+DVR G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQAAI QT RHG+Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKS++ERGFGHASV KT  VD++D A       KG  P    R+KF N
Sbjct:  683 LVRPVLHRASGKEEMIGPMEQPFMDIACLAEDVREGITTHQELDPMNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PHRTDNKLYRLQNPQAAIAQTARHGKYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSAYERGFGHASVYKTMKVDIKDEAERAGSDTKGDKP----RMKFGN 867          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 271 bits (693), Expect = 9.760e-81
Identity = 135/191 (70.68%), Postives = 153/191 (80.10%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRDIA------GKGSAPAAVARLKFCNV 185
            + RPVLH  +GR E IGPMEQ FM+IACL +DVR G+TTH ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R DNK+Y++  PQA +VQT RHG + +D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ERGFGHASV KT  VDLRD A      G G   +  ARLKF N+
Sbjct:  705 VVRPVLHRRTGRTERIGPMEQPFMDIACLREDVREGITTHMELDPNNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PYRPDNKLYRLQNPQAPVVQTARHGAFNMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTMTVDLRDKAEHMGAKGGGCDGSGEARLKFSNI 894          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: A0A7S0CJA4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA4_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.270e-79
Identity = 124/190 (65.26%), Postives = 154/190 (81.05%), Query Frame = 0
Query:    3 RPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRD---IAGKGSAPAAVARLKFCNVKPGS 189
            RPVLH  +G++E IGPMEQ F+ IACL +DV  G+TTH ELDPTN+L L++ +TPFSDYNQSPRNMYQCQMGKQTMGTPAH L PHR DNK+Y++  PQA IVQT +H  Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ERGFGHASV KT  V++ +   +  +G + ++  R++F N+KP S
Sbjct:   68 RPVLHRATGKVELIGPMEQPFLTIACLPEDVSEGITTHMELDPTNILDLISGMTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PHRPDNKLYRLQNPQAPIVQTAKHSLYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTKIVEVEEEGKMLSEGKSESS--RIRFSNLKPAS 254          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: K0RK47_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK47_THAOC)

HSP 1 Score: 261 bits (668), Expect = 8.270e-79
Identity = 123/166 (74.10%), Postives = 144/166 (86.75%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLRD 166
            + RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R+DNK+YK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ERGFGHASV KT  VD+ +
Sbjct:  290 VVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPGHSL-PYRSDNKLYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTVKVDIAE 454          
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Match: B8CA95_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA95_THAPS)

HSP 1 Score: 259 bits (663), Expect = 3.710e-77
Identity = 123/164 (75.00%), Postives = 141/164 (85.98%), Query Frame = 0
Query:    1 MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDL 164
            + RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R DNKMYK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ERGFGHASV KT  + L
Sbjct:  525 VVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PYRADNKMYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTIKIRL 687          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9315.20272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGZ7_ECTSI3.210e-12792.34DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect... [more]
A0A7S2EG60_TRICV2.950e-8674.40DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A835YVF9_9STRA3.030e-8570.81DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7R9U7R0_9STRA8.990e-8370.90DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A6U3PLE0_9STRA1.400e-8171.66DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A7S3V7B4_9STRA1.590e-8171.58DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S4JAV2_9STRA9.760e-8170.68DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A7S0CJA4_9STRA2.270e-7965.26DNA-directed RNA polymerase (Fragment) n=1 Tax=Pro... [more]
K0RK47_THAOC8.270e-7974.10DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
B8CA95_THAPS3.710e-7775.00DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 52..169
e-value: 1.9E-31
score: 109.5
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 53..153
e-value: 1.3E-46
score: 161.4
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 83..170
e-value: 1.3E-46
score: 161.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..168
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 1..168
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9315contigS-firma_M_contig9315:585..3470 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9315.20272.1mRNA_S-firma_M_contig9315.20272.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9315 583..3470 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9315.20272.1 ID=prot_S-firma_M_contig9315.20272.1|Name=mRNA_S-firma_M_contig9315.20272.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=209bp
MCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLS
LVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFP
QAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERG
FGHASVLKTFAVDLRDIAGKGSAPAAVARLKFCNVKPGSGSGLSGLPAGE
GGAATKLHE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015712DNA-dir_RNA_pol_su2
IPR014724RNA_pol_RPB2_OB-fold
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom